CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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hic1
(
Takifugu rubripes
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSTRUG00000004590
T112254_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Hic1
M00141_2.00
Mus musculus
RTGCCMNBN
NVNKGGCAY
PBM
Badis et al.(2009)
Hic1_2816
0.817
0.957
Hic1
M02933_2.00
Mus musculus
RTGCCAVCYBRTGCCAVC
GBTGGCAYVRGBTGGCAY
SELEX
Jolma et al.(2013)
Hic1_1
0.817
0.957
Hic1
M02934_2.00
Mus musculus
RTGCCAVCN
NGBTGGCAY
SELEX
Jolma et al.(2013)
Hic1_2
0.817
0.957
Hic1
M09003_2.00
Mus musculus
KGGCAMCCH
DGGKTGCCM
Misc
Kulakovskiy et al.(2013)
HIC1_MOUSE.H11MO.0.C
0.817
0.957
HIC2
M02902_2.00
Homo sapiens
RTGCCMVNN
NNBKGGCAY
SELEX
Jolma et al.(2013)
HIC2_1
0.800
0.870
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTRUP00000010922
C2H2 ZF
427
449
YVCIPCDKGFPSSEQLNAHVETH
ENSTRUP00000010922
C2H2 ZF
492
514
YRCSSCDKSYKDPATLRQHEKTH
ENSTRUP00000010922
C2H2 ZF
520
542
YPCSICGKKFTQRGTMTRHMRSH
ENSTRUP00000010922
C2H2 ZF
548
570
FACDSCGMRFTRQYRLTEHMRIH
ENSTRUP00000010922
C2H2 ZF
576
598
YECQVCGGKFAQQRNLISHMKMH
ENSTRUP00000010923
C2H2 ZF
410
432
YVCIPCDKGFPSSEQLNAHVETH
ENSTRUP00000010923
C2H2 ZF
475
497
YRCSSCDKSYKDPATLRQHEKTH
ENSTRUP00000010923
C2H2 ZF
503
525
YPCSICGKKFTQRGTMTRHMRSH
ENSTRUP00000010923
C2H2 ZF
531
553
FACDSCGMRFTRQYRLTEHMRIH
ENSTRUP00000010923
C2H2 ZF
559
581
YECQVCGGKFAQQRNLISHMKMH
Links
Other
C2H2 ZF
family TFs
Other
Takifugu rubripes
TFs
64 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy