OBART08G17550 (Oryza barthii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 OBART08G17550 T124652_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SGR5
M06805_2.00 		Arabidopsis thaliana
WTTTTGTCTTWTHYD
HRDAWAAGACAAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_col_a 		0.759 0.905
SGR5
M06806_2.00 		Arabidopsis thaliana
WTTTGTCTYWWHBNN
NNVDWWRAGACAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_colamp_a 		0.759 0.905
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART08G17550.1 C2H2 ZF 143 164
OBART08G17550.1 C2H2 ZF 164 189

Links

Other C2H2 ZF family TFs
Other Oryza barthii TFs

119 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ORGLA09G0169200 Oryza glaberrima ORGLA09G0169200 I 0.827
OS08G0467100 Oryza sativa OS08G0467100 I 0.827
ORGLA08G0153600 Oryza glaberrima ORGLA08G0153600 I 0.827
OMERI08G14120 Oryza meridionalis OMERI08G14120 I 0.827
OPUNC08G15410 Oryza punctata OPUNC08G15410 I 0.827
ONIVA08G19430 Oryza nivara ONIVA08G19430 I 0.827
OGLUM08G18370 Oryza glumaepatula OGLUM08G18370 I 0.827
LPERR08G14510 Leersia perrieri LPERR08G14510 I 0.827
MLOC_57613 Hordeum vulgare MLOC_57613 I 0.818
GRMZM2G123094 Zea mays GRMZM2G123094 I 0.812
OMERI09G13410 Oryza meridionalis OMERI09G13410 I 0.812
GRMZM2G141031 Zea mays GRMZM2G141031 I 0.812
OGLUM09G12720 Oryza glumaepatula OGLUM09G12720 I 0.812
LPERR09G08790 Leersia perrieri LPERR09G08790 I 0.812
OBART09G12250 Oryza barthii OBART09G12250 I 0.812
OPUNC09G10740 Oryza punctata OPUNC09G10740 I 0.812
Pavir.Ba02057 Panicum virgatum Pavir.Ba02057 I 0.812
Pavir.Fa00691 Panicum virgatum Pavir.Fa00691 I 0.812
Pavir.Fb01741 Panicum virgatum Pavir.Fb01741 I 0.812
Pavir.J40191 Panicum virgatum Pavir.J40191 I 0.812
Si029726m.g Setaria italica Si029726m.g I 0.812
Sb07g022700 Sorghum bicolor Sb07g022700 I 0.812
GRMZM2G110107 Zea mays GRMZM2G110107 I 0.812
ORGLA09G0092400 Oryza glaberrima ORGLA09G0092400 I 0.812
Sb02g026230 Sorghum bicolor Sb02g026230 I 0.812
ONIVA09G13010 Oryza nivara ONIVA09G13010 I 0.812
ORUFI09G13180 Oryza rufipogon ORUFI09G13180 I 0.812
BGIOSGA030871 Oryza indica BGIOSGA030871 I 0.812
BRADI3G37890 Brachypodium distachyon BRADI3G37890 I 0.812
BRADI4G31770 Brachypodium distachyon BRADI4G31770 I 0.812
PK17145.1 Cannabis sativa PK17145.1 I 0.798
Cla005913 Citrullus lanatus Cla005913 I 0.782
GSMUA_Achr5G23130_001 Musa acuminata GSMUA_Achr5G23130_001 I 0.777
OPUNC03G09440 Oryza punctata OPUNC03G09440 I 0.768
ONIVA03G10380 Oryza nivara ONIVA03G10380 I 0.768
BRADI1G68730 Brachypodium distachyon BRADI1G68730 I 0.768
OMERI03G09110 Oryza meridionalis OMERI03G09110 I 0.768
ORGLA03G0094200 Oryza glaberrima ORGLA03G0094200 I 0.768
Ca_22171 Cicer arietinum Ca_22171 I 0.768
Pavir.J12350 Panicum virgatum Pavir.J12350 I 0.768
BGIOSGA011151 Oryza indica BGIOSGA011151 I 0.768
mgf008235m Mimulus guttatus mgf008235m I 0.768
OS03G0237250 Oryza sativa OS03G0237250 I 0.768
ORUFI03G10000 Oryza rufipogon ORUFI03G10000 I 0.768
Traes_4AS_2718699A7 Triticum aestivum Traes_4AS_2718699A7 I 0.768
GLYMA08G06130 Glycine max GLYMA08G06130 I 0.768
OGLUM03G09920 Oryza glumaepatula OGLUM03G09920 I 0.768
GLYMA05G33590 Glycine max GLYMA05G33590 I 0.768
LPERR03G08760 Leersia perrieri LPERR03G08760 I 0.768
GRMZM2G074032 Zea mays GRMZM2G074032 I 0.768
GLYMA07G12170 Glycine max GLYMA07G12170 I 0.768
F775_43255 Aegilops tauschii F775_43255 I 0.768
GLYMA09G30030 Glycine max GLYMA09G30030 I 0.768
GRMZM2G465595 Zea mays GRMZM2G465595 I 0.768
Aquca_002_01252 Aquilegia coerulea Aquca_002_01252 I 0.762
Ciclev10015315m.g Citrus clementina Ciclev10015315m.g I 0.762
Cucsa.112090 Cucumis sativus Cucsa.112090 I 0.762
Ca_05083 Cicer arietinum Ca_05083 I 0.762
Ciclev10020125m.g Citrus clementina Ciclev10020125m.g I 0.762
Pm025274 Prunus mume Pm025274 I 0.762
28952.m000016 Ricinus communis 28952.m000016 I 0.762
Cla018945 Citrullus lanatus Cla018945 I 0.762
Gorai.002G171100 Gossypium raimondii Gorai.002G171100 I 0.762
orange1.1g037502m.g Citrus sinensis orange1.1g037502m.g I 0.762
SapurV1A.0015s0850 Salix purpurea SapurV1A.0015s0850 I 0.762
SapurV1A.0055s0020 Salix purpurea SapurV1A.0055s0020 I 0.762
SapurV1A.1169s0070 Salix purpurea SapurV1A.1169s0070 I 0.762
orange1.1g014184m.g Citrus sinensis orange1.1g014184m.g I 0.762
Lus10031882.g Linum usitatissimum Lus10031882.g I 0.762
gene09325-v1.0-hybrid Fragaria vesca gene09325-v1.0-hybrid I 0.762
VIT_17s0000g01870 Vitis vinifera VIT_17s0000g01870 I 0.762
Gorai.008G293000 Gossypium raimondii Gorai.008G293000 I 0.762
Lus10031314.g Linum usitatissimum Lus10031314.g I 0.762
evm.TU.supercontig_7.131 Carica papaya evm.TU.supercontig_7.131 I 0.762
cassava18079.valid.m1 Manihot esculenta cassava18079.valid.m1 I 0.762
PRUPE_ppa004447mg Prunus persica PRUPE_ppa004447mg I 0.762
POPTR_0012s03730 Populus trichocarpa POPTR_0012s03730 I 0.762
VIT_01s0011g06400 Vitis vinifera VIT_01s0011g06400 I 0.762
POPTR_0008s13980 Populus trichocarpa POPTR_0008s13980 I 0.762
POPTR_0010s11160 Populus trichocarpa POPTR_0010s11160 I 0.762
PGSC0003DMG400031049 Solanum tuberosum PGSC0003DMG400031049 I 0.762
GLYMA08G09760 Glycine max GLYMA08G09760 I 0.762
TCM_011210 Theobroma cacao TCM_011210 I 0.762
Solyc06g072360.2 Solanum lycopersicum Solyc06g072360.2 I 0.762
GLYMA05G26780 Glycine max GLYMA05G26780 I 0.762
Bra004283 Brassica rapa Bra004283 I 0.759
SGR5 Arabidopsis lyrata fgenesh2_kg.5__108__AT2G01940.1 I 0.759
Bra004050 Brassica rapa Bra004050 I 0.759
Bo6g106560 Brassica oleracea Bo6g106560 I 0.759
Bo9g070370 Brassica oleracea Bo9g070370 I 0.759
Bra010981 Brassica rapa Bra010981 I 0.759
Bra017432 Brassica rapa Bra017432 I 0.759
Thhalv10009376m.g Eutrema salsugineum Thhalv10009376m.g I 0.759
Thhalv10018614m.g Eutrema salsugineum Thhalv10018614m.g I 0.759
Bra026624 Brassica rapa Bra026624 I 0.759
Thhalv10004221m.g Eutrema salsugineum Thhalv10004221m.g I 0.759
OB09G18760 Oryza brachyantha OB09G18760 I 0.759
AtIDD14 Arabidopsis lyrata fgenesh2_kg.2__1036__AT1G68130.1 I 0.759
IDD14 Arabidopsis thaliana AT1G68130 I 0.759
Bra024771 Brassica rapa Bra024771 I 0.759
SGR5 Arabidopsis thaliana AT2G01940 D 0.759
Eucgr.G02066 Eucalyptus grandis Eucgr.G02066 I 0.759
Bostr.0556s0022 Boechera stricta Bostr.0556s0022 I 0.759
Bostr.15697s0010 Boechera stricta Bostr.15697s0010 I 0.759
Bostr.26959s0085 Boechera stricta Bostr.26959s0085 I 0.759
Bo5g043540 Brassica oleracea Bo5g043540 I 0.759
Bo3g139880 Brassica oleracea Bo3g139880 I 0.759
GSMUA_Achr6G02490_001 Musa acuminata GSMUA_Achr6G02490_001 I 0.759
Bo2g134790 Brassica oleracea Bo2g134790 I 0.759
Cagra.1111s0006 Capsella grandiflora Cagra.1111s0006 I 0.759
Cagra.2231s0014 Capsella grandiflora Cagra.2231s0014 I 0.759
Eucgr.H00574 Eucalyptus grandis Eucgr.H00574 I 0.759
Eucgr.K02292 Eucalyptus grandis Eucgr.K02292 I 0.759
Bo6g097320 Brassica oleracea Bo6g097320 I 0.759
Carubv10020337m.g Capsella rubella Carubv10020337m.g I 0.759
Carubv10017254m.g Capsella rubella Carubv10017254m.g I 0.759
Cagra.3834s0006 Capsella grandiflora Cagra.3834s0006 I 0.759
Carubv10009424m.g Capsella rubella Carubv10009424m.g I 0.759
AtIDD16 Arabidopsis thaliana AT1G25250 I 0.759