Carubv10009424m.g (Capsella rubella)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Carubv10009424m.g T142711_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SGR5
M06805_2.00 		Arabidopsis thaliana
WTTTTGTCTTWTHYD
HRDAWAAGACAAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_col_a 		0.818 0.955
SGR5
M06806_2.00 		Arabidopsis thaliana
WTTTGTCTYWWHBNN
NNVDWWRAGACAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_colamp_a 		0.818 0.955
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10009424m C2H2 ZF 140 161
Carubv10009424m C2H2 ZF 160 187

Links

Other C2H2 ZF family TFs
Other Capsella rubella TFs

145 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Thhalv10009376m.g Eutrema salsugineum Thhalv10009376m.g I 0.827
Bo3g139880 Brassica oleracea Bo3g139880 I 0.827
Cagra.2231s0014 Capsella grandiflora Cagra.2231s0014 I 0.827
Bra010981 Brassica rapa Bra010981 I 0.827
AtIDD16 Arabidopsis thaliana AT1G25250 I 0.827
Bostr.15697s0010 Boechera stricta Bostr.15697s0010 I 0.827
OB09G18760 Oryza brachyantha OB09G18760 I 0.822
Bra024771 Brassica rapa Bra024771 I 0.822
GSMUA_Achr6G02490_001 Musa acuminata GSMUA_Achr6G02490_001 I 0.822
Bo5g043540 Brassica oleracea Bo5g043540 I 0.822
cassava1947.valid.m1 Manihot esculenta cassava1947.valid.m1 I 0.821
SapurV1A.0074s0350 Salix purpurea SapurV1A.0074s0350 I 0.821
GLYMA05G33590 Glycine max GLYMA05G33590 I 0.818
SGR5 Arabidopsis lyrata fgenesh2_kg.5__108__AT2G01940.1 I 0.818
GLYMA09G30030 Glycine max GLYMA09G30030 I 0.818
Eucgr.K02292 Eucalyptus grandis Eucgr.K02292 I 0.818
Eucgr.H00574 Eucalyptus grandis Eucgr.H00574 I 0.818
Bostr.0556s0022 Boechera stricta Bostr.0556s0022 I 0.818
mgf008235m Mimulus guttatus mgf008235m I 0.818
GLYMA08G06130 Glycine max GLYMA08G06130 I 0.818
GLYMA07G12170 Glycine max GLYMA07G12170 I 0.818
Ca_22171 Cicer arietinum Ca_22171 I 0.818
Cagra.3834s0006 Capsella grandiflora Cagra.3834s0006 I 0.818
Thhalv10004221m.g Eutrema salsugineum Thhalv10004221m.g I 0.818
Bo2g134790 Brassica oleracea Bo2g134790 I 0.818
SGR5 Arabidopsis thaliana AT2G01940 D 0.818
Carubv10017254m.g Capsella rubella Carubv10017254m.g I 0.818
Bo9g070370 Brassica oleracea Bo9g070370 I 0.818
Bra026624 Brassica rapa Bra026624 I 0.818
Bra017432 Brassica rapa Bra017432 I 0.818
Eucgr.G02066 Eucalyptus grandis Eucgr.G02066 I 0.818
PRUPE_ppa005331mg Prunus persica PRUPE_ppa005331mg I 0.816
chr4.CM0387.280.nc Lotus japonicus chr4.CM0387.280.nc I 0.816
GSMUA_Achr7G18610_001 Musa acuminata GSMUA_Achr7G18610_001 I 0.816
gene00618-v1.0-hybrid Fragaria vesca gene00618-v1.0-hybrid I 0.816
Pm005926 Prunus mume Pm005926 I 0.816
OPUNC03G09440 Oryza punctata OPUNC03G09440 I 0.812
OS03G0237250 Oryza sativa OS03G0237250 I 0.812
Traes_4AS_2718699A7 Triticum aestivum Traes_4AS_2718699A7 I 0.812
ORUFI03G10000 Oryza rufipogon ORUFI03G10000 I 0.812
ORGLA03G0094200 Oryza glaberrima ORGLA03G0094200 I 0.812
OMERI03G09110 Oryza meridionalis OMERI03G09110 I 0.812
ONIVA03G10380 Oryza nivara ONIVA03G10380 I 0.812
OGLUM03G09920 Oryza glumaepatula OGLUM03G09920 I 0.812
GRMZM2G465595 Zea mays GRMZM2G465595 I 0.812
BGIOSGA011151 Oryza indica BGIOSGA011151 I 0.812
BRADI1G68730 Brachypodium distachyon BRADI1G68730 I 0.812
F775_43255 Aegilops tauschii F775_43255 I 0.812
GRMZM2G074032 Zea mays GRMZM2G074032 I 0.812
Pavir.J12350 Panicum virgatum Pavir.J12350 I 0.812
LPERR03G08760 Leersia perrieri LPERR03G08760 I 0.812
Cla018945 Citrullus lanatus Cla018945 I 0.811
SapurV1A.0055s0020 Salix purpurea SapurV1A.0055s0020 I 0.811
VIT_01s0011g06400 Vitis vinifera VIT_01s0011g06400 I 0.811
Solyc06g072360.2 Solanum lycopersicum Solyc06g072360.2 I 0.811
TCM_011210 Theobroma cacao TCM_011210 I 0.811
TCM_039880 Theobroma cacao TCM_039880 I 0.811
SapurV1A.1169s0070 Salix purpurea SapurV1A.1169s0070 I 0.811
VIT_17s0000g01870 Vitis vinifera VIT_17s0000g01870 I 0.811
cassava18079.valid.m1 Manihot esculenta cassava18079.valid.m1 I 0.811
gene09325-v1.0-hybrid Fragaria vesca gene09325-v1.0-hybrid I 0.811
Aquca_002_01252 Aquilegia coerulea Aquca_002_01252 I 0.811
evm.TU.supercontig_2.118 Carica papaya evm.TU.supercontig_2.118 I 0.811
Ciclev10020125m.g Citrus clementina Ciclev10020125m.g I 0.811
Cucsa.122150 Cucumis sativus Cucsa.122150 I 0.811
Cucsa.112090 Cucumis sativus Cucsa.112090 I 0.811
28952.m000016 Ricinus communis 28952.m000016 I 0.811
Gorai.008G293000 Gossypium raimondii Gorai.008G293000 I 0.811
cassava36596.valid.m1 Manihot esculenta cassava36596.valid.m1 I 0.811
Gorai.002G171100 Gossypium raimondii Gorai.002G171100 I 0.811
orange1.1g037502m.g Citrus sinensis orange1.1g037502m.g I 0.811
POPTR_0015s05180 Populus trichocarpa POPTR_0015s05180 I 0.811
POPTR_0008s13980 Populus trichocarpa POPTR_0008s13980 I 0.811
PGSC0003DMG400026959 Solanum tuberosum PGSC0003DMG400026959 I 0.811
POPTR_0010s11160 Populus trichocarpa POPTR_0010s11160 I 0.811
PGSC0003DMG400031049 Solanum tuberosum PGSC0003DMG400031049 I 0.811
POPTR_0012s03730 Populus trichocarpa POPTR_0012s03730 I 0.811
Bra024841 Brassica rapa Bra024841 I 0.811
Gorai.005G134600 Gossypium raimondii Gorai.005G134600 I 0.806
Gorai.006G190500 Gossypium raimondii Gorai.006G190500 I 0.806
GLYMA05G26780 Glycine max GLYMA05G26780 I 0.806
evm.TU.supercontig_7.131 Carica papaya evm.TU.supercontig_7.131 I 0.806
Gorai.007G002600 Gossypium raimondii Gorai.007G002600 I 0.806
GLYMA08G09760 Glycine max GLYMA08G09760 I 0.806
Lus10026369.g Linum usitatissimum Lus10026369.g I 0.806
Lus10031314.g Linum usitatissimum Lus10031314.g I 0.806
Lus10031882.g Linum usitatissimum Lus10031882.g I 0.806
GSMUA_Achr10G29940_001 Musa acuminata GSMUA_Achr10G29940_001 I 0.806
PK25720.1 Cannabis sativa PK25720.1 I 0.806
orange1.1g014184m.g Citrus sinensis orange1.1g014184m.g I 0.806
Gorai.009G329200 Gossypium raimondii Gorai.009G329200 I 0.806
Ciclev10015315m.g Citrus clementina Ciclev10015315m.g I 0.806
Ca_05083 Cicer arietinum Ca_05083 I 0.806
PRUPE_ppa004447mg Prunus persica PRUPE_ppa004447mg I 0.806
Pm025274 Prunus mume Pm025274 I 0.806
IDD14 Arabidopsis thaliana AT1G68130 I 0.803
Gorai.008G169500 Gossypium raimondii Gorai.008G169500 I 0.796
Cagra.1111s0006 Capsella grandiflora Cagra.1111s0006 I 0.794
Bostr.26959s0085 Boechera stricta Bostr.26959s0085 I 0.794
AtIDD14 Arabidopsis lyrata fgenesh2_kg.2__1036__AT1G68130.1 I 0.794
Carubv10020337m.g Capsella rubella Carubv10020337m.g I 0.794
Bra004283 Brassica rapa Bra004283 I 0.794
Bo6g097320 Brassica oleracea Bo6g097320 I 0.794
Thhalv10018614m.g Eutrema salsugineum Thhalv10018614m.g I 0.794
Bo6g106560 Brassica oleracea Bo6g106560 I 0.794
Bra004050 Brassica rapa Bra004050 I 0.794
AMTR_s00024p00098860 Amborella trichopoda AMTR_s00024p00098860 I 0.792
GSMUA_Achr5G23130_001 Musa acuminata GSMUA_Achr5G23130_001 I 0.792
SapurV1A.0015s0850 Salix purpurea SapurV1A.0015s0850 I 0.788
Cla005913 Citrullus lanatus Cla005913 I 0.786
PK17145.1 Cannabis sativa PK17145.1 I 0.783
Solyc01g005060.2 Solanum lycopersicum Solyc01g005060.2 I 0.782
Gorai.005G154300 Gossypium raimondii Gorai.005G154300 I 0.773
Pavir.Fb01741 Panicum virgatum Pavir.Fb01741 I 0.768
Pavir.Fa00691 Panicum virgatum Pavir.Fa00691 I 0.768
Sb07g022700 Sorghum bicolor Sb07g022700 I 0.768
OPUNC09G10740 Oryza punctata OPUNC09G10740 I 0.768
Pavir.Ba02057 Panicum virgatum Pavir.Ba02057 I 0.768
Pavir.J40191 Panicum virgatum Pavir.J40191 I 0.768
OMERI09G13410 Oryza meridionalis OMERI09G13410 I 0.768
ONIVA09G13010 Oryza nivara ONIVA09G13010 I 0.768
BGIOSGA030871 Oryza indica BGIOSGA030871 I 0.768
OGLUM09G12720 Oryza glumaepatula OGLUM09G12720 I 0.768
OBART09G12250 Oryza barthii OBART09G12250 I 0.768
Sb02g026230 Sorghum bicolor Sb02g026230 I 0.768
Si029726m.g Setaria italica Si029726m.g I 0.768
LPERR09G08790 Leersia perrieri LPERR09G08790 I 0.768
GRMZM2G123094 Zea mays GRMZM2G123094 I 0.768
GRMZM2G141031 Zea mays GRMZM2G141031 I 0.768
MLOC_57613 Hordeum vulgare MLOC_57613 I 0.768
ORGLA09G0092400 Oryza glaberrima ORGLA09G0092400 I 0.768
ORUFI09G13180 Oryza rufipogon ORUFI09G13180 I 0.768
BRADI4G31770 Brachypodium distachyon BRADI4G31770 I 0.768
estExt_Genewise1.C_2180024 Physcomitrella patens estExt_Genewise1.C_2180024 N 0.763
OMERI08G14120 Oryza meridionalis OMERI08G14120 I 0.759
LPERR08G14510 Leersia perrieri LPERR08G14510 I 0.759
GRMZM2G110107 Zea mays GRMZM2G110107 I 0.759
ONIVA08G19430 Oryza nivara ONIVA08G19430 I 0.759
ORGLA08G0153600 Oryza glaberrima ORGLA08G0153600 I 0.759
OPUNC08G15410 Oryza punctata OPUNC08G15410 I 0.759
ORGLA09G0169200 Oryza glaberrima ORGLA09G0169200 I 0.759
BRADI3G37890 Brachypodium distachyon BRADI3G37890 I 0.759
OS08G0467100 Oryza sativa OS08G0467100 I 0.759
OGLUM08G18370 Oryza glumaepatula OGLUM08G18370 I 0.759
OBART08G17550 Oryza barthii OBART08G17550 I 0.759