CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PAS_chr3_0259
(
Komagataella pastoris
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
PAS_chr3_0259
T125390_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
YGR067C
M00029_2.00
Saccharomyces cerevisiae
HVCCCCNC
GNGGGGBD
PBM
Badis et al.(2008)
YGR067C_2151
0.777
0.826
YGR067C
M01534_2.00
Saccharomyces cerevisiae
NCCCCDCNNN
NNNGHGGGGN
PBM
Zhu et al.(2009)
Ygr067c
0.777
0.826
YGR067C
M07459_2.00
Saccharomyces cerevisiae
NCCCCDCNNNNNNN
NNNNNNNGHGGGGN
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0425.1
0.777
0.826
YGR067C
M08528_2.00
Saccharomyces cerevisiae
NCCCCDCNNNNNNN
NNNNNNNGHGGGGN
Misc
DeBoer et al.(2011)
YGR067C_548
0.777
0.826
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CAY70296
C2H2 ZF
7
29
YICSFCAKAFSRSEHKLRHERSH
CAY70296
C2H2 ZF
35
58
FVCNVCDNSFVRRDLLQRHCRTVH
Links
Other
C2H2 ZF
family TFs
Other
Komagataella pastoris
TFs
17 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy