CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
PGSC0003DMG400026020
(
Solanum tuberosum
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
PGSC0003DMG400026020
T125838_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZAT9
M06817_2.00
Arabidopsis thaliana
YTACTWHH
DDWAGTAR
Dap-seq
OMalley et al.(2016)
At3g60580_col_a
0.773
0.848
ZAT4
M01168_2.00
Arabidopsis thaliana
NNHRSTN
NASYDNN
PBM
Lambert et al.(2019)
pTH11142
0.773
0.826
ZAT1
M01167_2.00
Arabidopsis thaliana
NHRCTNN
NNAGYDN
PBM
Lambert et al.(2019)
pTH10246
0.772
0.804
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGSC0003DMT400066939
C2H2 ZF
189
211
YRCETCNKVFRSYQALGGHRASH
PGSC0003DMT400066939
C2H2 ZF
236
258
HQCPVCYRVFPSGQALGGHKRSH
Links
Other
C2H2 ZF
family TFs
Other
Solanum tuberosum
TFs
107 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy