PGSC0003DMG400026020 (Solanum tuberosum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 PGSC0003DMG400026020 T125838_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.773 0.848
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.773 0.826
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.772 0.804
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400066939 C2H2 ZF 189 211
PGSC0003DMT400066939 C2H2 ZF 236 258

Links

Other C2H2 ZF family TFs
Other Solanum tuberosum TFs

107 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc01g090840.2 Solanum lycopersicum Solyc01g090840.2 I 0.827
Gorai.008G106500 Gossypium raimondii Gorai.008G106500 I 0.802
Bo3g037560 Brassica oleracea Bo3g037560 I 0.797
Bra000372 Brassica rapa Bra000372 I 0.797
Bra040325 Brassica rapa Bra040325 I 0.797
Thhalv10001538m.g Eutrema salsugineum Thhalv10001538m.g I 0.797
30174.m008818 Ricinus communis 30174.m008818 I 0.797
Bo4g195370 Brassica oleracea Bo4g195370 I 0.797
cassava19892.m1 Manihot esculenta cassava19892.m1 I 0.797
Eucgr.D02497 Eucalyptus grandis Eucgr.D02497 I 0.796
cassava14164.m1 Manihot esculenta cassava14164.m1 I 0.788
mgf021094m Mimulus guttatus mgf021094m I 0.787
BRADI1G16010 Brachypodium distachyon BRADI1G16010 I 0.784
mgf017082m Mimulus guttatus mgf017082m I 0.782
Gorai.001G175400 Gossypium raimondii Gorai.001G175400 I 0.779
evm.TU.supercontig_2070.1 Carica papaya evm.TU.supercontig_2070.1 I 0.779
VIT_15s0021g02720 Vitis vinifera VIT_15s0021g02720 I 0.779
Gorai.004G164000 Gossypium raimondii Gorai.004G164000 I 0.778
Eucgr.K00165 Eucalyptus grandis Eucgr.K00165 I 0.777
Pavir.J15191 Panicum virgatum Pavir.J15191 I 0.776
Pavir.Ba01050 Panicum virgatum Pavir.Ba01050 I 0.776
AC185108.3_FG011 Zea mays AC185108.3_FG011 I 0.776
Sb02g038070 Sorghum bicolor Sb02g038070 I 0.776
Si032711m.g Setaria italica Si032711m.g I 0.776
AMTR_s00137p00104280 Amborella trichopoda AMTR_s00137p00104280 I 0.776
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I 0.775
OS12G0583700 Oryza sativa OS12G0583700 I 0.775
OPUNC12G15600 Oryza punctata OPUNC12G15600 I 0.775
MLOC_51405 Hordeum vulgare MLOC_51405 I 0.775
Bostr.13158s0058 Boechera stricta Bostr.13158s0058 I 0.773
scaffold_503291.1 Arabidopsis lyrata scaffold_503291.1 I 0.773
Cagra.6011s0004 Capsella grandiflora Cagra.6011s0004 I 0.773
Carubv10017660m.g Capsella rubella Carubv10017660m.g I 0.773
POPTR_0002s14460 Populus trichocarpa POPTR_0002s14460 I 0.773
Bostr.25993s0262 Boechera stricta Bostr.25993s0262 I 0.773
SapurV1A.0248s0230 Salix purpurea SapurV1A.0248s0230 I 0.773
Bo4g104940 Brassica oleracea Bo4g104940 I 0.773
Bra014483 Brassica rapa Bra014483 I 0.773
Thhalv10006508m.g Eutrema salsugineum Thhalv10006508m.g I 0.773
fgenesh2_kg.4__2705__AT2G45120.1 Arabidopsis lyrata fgenesh2_kg.4__2705__AT2G45120.1 I 0.773
Bo6g077190 Brassica oleracea Bo6g077190 I 0.773
Bra007545 Brassica rapa Bra007545 I 0.773
ZAT9 Arabidopsis thaliana AT3G60580 D 0.773
ZAT4 Arabidopsis thaliana AT2G45120 D 0.773
Bo8g095300 Brassica oleracea Bo8g095300 I 0.773
Bra003422 Brassica rapa Bra003422 I 0.773
ZAT1 Arabidopsis thaliana AT1G02030 D 0.772
Bostr.5325s0123 Boechera stricta Bostr.5325s0123 I 0.772
SapurV1A.0033s0440 Salix purpurea SapurV1A.0033s0440 I 0.772
GLYMA01G32981 Glycine max GLYMA01G32981 I 0.770
MTR_0160s0030 Medicago truncatula MTR_0160s0030 I 0.770
Ciclev10020499m.g Citrus clementina Ciclev10020499m.g I 0.770
Ca_23672 Cicer arietinum Ca_23672 I 0.770
GLYMA03G03950 Glycine max GLYMA03G03950 I 0.770
orange1.1g044606m.g Citrus sinensis orange1.1g044606m.g I 0.770
GLYMA10G40400 Glycine max GLYMA10G40400 I 0.769
Cucsa.219210 Cucumis sativus Cucsa.219210 I 0.769
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I 0.769
Cucsa.352740 Cucumis sativus Cucsa.352740 I 0.769
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I 0.769
chr1.LjT45O14.140.nd Lotus japonicus chr1.LjT45O14.140.nd I 0.769
Solyc01g107170.2 Solanum lycopersicum Solyc01g107170.2 I 0.769
chr1.CM0050.50.nc Lotus japonicus chr1.CM0050.50.nc I 0.769
Ca_05641 Cicer arietinum Ca_05641 I 0.769
PGSC0003DMG400020929 Solanum tuberosum PGSC0003DMG400020929 I 0.768
Lus10009278.g Linum usitatissimum Lus10009278.g I 0.768
GSMUA_AchrUn_randomG03030_001 Musa acuminata GSMUA_AchrUn_randomG03030_001 I 0.768
GSMUA_Achr11G21040_001 Musa acuminata GSMUA_Achr11G21040_001 I 0.768
Carubv10023569m.g Capsella rubella Carubv10023569m.g I 0.768
Cagra.0239s0063 Capsella grandiflora Cagra.0239s0063 I 0.768
Solyc03g115450.1 Solanum lycopersicum Solyc03g115450.1 I 0.767
PGSC0003DMG400024550 Solanum tuberosum PGSC0003DMG400024550 I 0.767
MLOC_70662 Hordeum vulgare MLOC_70662 I 0.766
GSMUA_Achr2G13410_001 Musa acuminata GSMUA_Achr2G13410_001 I 0.766
GLYMA01G18606 Glycine max GLYMA01G18606 I 0.765
LPERR03G21480 Leersia perrieri LPERR03G21480 I 0.765
Lus10038929.g Linum usitatissimum Lus10038929.g N 0.765
ONIVA04G19260 Oryza nivara ONIVA04G19260 I 0.762
GSMUA_Achr4G12160_001 Musa acuminata GSMUA_Achr4G12160_001 I 0.762
GSMUA_Achr4G26920_001 Musa acuminata GSMUA_Achr4G26920_001 I 0.762
OB04G28040 Oryza brachyantha OB04G28040 I 0.762
GSMUA_Achr1G01550_001 Musa acuminata GSMUA_Achr1G01550_001 I 0.762
GRMZM2G170520 Zea mays GRMZM2G170520 I 0.762
BGIOSGA016894 Oryza indica BGIOSGA016894 I 0.762
BRADI3G33100 Brachypodium distachyon BRADI3G33100 I 0.762
OBART04G21020 Oryza barthii OBART04G21020 I 0.762
OLONG_016061 Oryza longistaminata OLONG_016061 I 0.762
ORUFI04G22610 Oryza rufipogon ORUFI04G22610 I 0.762
OS04G0552700 Oryza sativa OS04G0552700 I 0.762
ORGLA04G0180800 Oryza glaberrima ORGLA04G0180800 I 0.762
Pavir.Ab02618 Panicum virgatum Pavir.Ab02618 I 0.762
OMERI04G17450 Oryza meridionalis OMERI04G17450 I 0.762
OPUNC04G18700 Oryza punctata OPUNC04G18700 I 0.762
Si010615m.g Setaria italica Si010615m.g I 0.762
OS03G0437200 Oryza sativa OS03G0437200 I 0.760
OB03G31780 Oryza brachyantha OB03G31780 I 0.760
BGIOSGA010468 Oryza indica BGIOSGA010468 I 0.760
OGLUM03G23350 Oryza glumaepatula OGLUM03G23350 I 0.760
OBART03G22570 Oryza barthii OBART03G22570 I 0.760
OLONG_027628 Oryza longistaminata OLONG_027628 I 0.760
ORGLA03G0210300 Oryza glaberrima ORGLA03G0210300 I 0.760
ORUFI03G23240 Oryza rufipogon ORUFI03G23240 I 0.760
Thhalv10009894m.g Eutrema salsugineum Thhalv10009894m.g I 0.759
Bo2g161550 Brassica oleracea Bo2g161550 N 0.758
MTR_4g027440 Medicago truncatula MTR_4g027440 I 0.758
Bra029315 Brassica rapa Bra029315 N 0.758
evm.TU.supercontig_111.55 Carica papaya evm.TU.supercontig_111.55 N 0.757