CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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cassava14164.m1
(
Manihot esculenta
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
cassava14164.m1
T137820_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZAT4
M01168_2.00
Arabidopsis thaliana
NNHRSTN
NASYDNN
PBM
Lambert et al.(2019)
pTH11142
0.788
0.870
ZAT9
M06817_2.00
Arabidopsis thaliana
YTACTWHH
DDWAGTAR
Dap-seq
OMalley et al.(2016)
At3g60580_col_a
0.788
0.870
ZAT1
M01167_2.00
Arabidopsis thaliana
NHRCTNN
NNAGYDN
PBM
Lambert et al.(2019)
pTH10246
0.787
0.826
AZF2
M01854_2.00
Arabidopsis thaliana
NASTRNN
NNYASTN
PBM
Weirauch et al.(2014)
pTH8258
0.769
0.696
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava14164.m1
C2H2 ZF
232
254
YRCETCKKVFKSYQALGGHRASH
cassava14164.m1
C2H2 ZF
285
307
HECPYCFRVFSSGQALGGHKRTH
Links
Other
C2H2 ZF
family TFs
Other
Manihot esculenta
TFs
178 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
mgf021094m
Mimulus guttatus
mgf021094m
I
0.820
cassava19892.m1
Manihot esculenta
cassava19892.m1
I
0.818
30174.m008818
Ricinus communis
30174.m008818
I
0.818
mgf017082m
Mimulus guttatus
mgf017082m
I
0.815
Gorai.008G106500
Gossypium raimondii
Gorai.008G106500
I
0.811
Eucgr.D02497
Eucalyptus grandis
Eucgr.D02497
I
0.811
Eucgr.K00165
Eucalyptus grandis
Eucgr.K00165
I
0.807
MTR_0160s0030
Medicago truncatula
MTR_0160s0030
I
0.797
GLYMA03G03950
Glycine max
GLYMA03G03950
I
0.797
Ciclev10020499m.g
Citrus clementina
Ciclev10020499m.g
I
0.797
orange1.1g044606m.g
Citrus sinensis
orange1.1g044606m.g
I
0.797
GLYMA01G32981
Glycine max
GLYMA01G32981
I
0.797
Ca_23672
Cicer arietinum
Ca_23672
I
0.797
POPTR_0002s14460
Populus trichocarpa
POPTR_0002s14460
I
0.794
GLYMA10G40400
Glycine max
GLYMA10G40400
I
0.793
OPUNC12G15600
Oryza punctata
OPUNC12G15600
I
0.793
Eucgr.F02262
Eucalyptus grandis
Eucgr.F02262
I
0.793
OS12G0583700
Oryza sativa
OS12G0583700
I
0.793
evm.TU.supercontig_249.7
Carica papaya
evm.TU.supercontig_249.7
I
0.793
Traes_4BS_FE945D2FC
Triticum aestivum
Traes_4BS_FE945D2FC
I
0.793
MLOC_51405
Hordeum vulgare
MLOC_51405
I
0.793
Ca_05641
Cicer arietinum
Ca_05641
I
0.793
SapurV1A.0033s0440
Salix purpurea
SapurV1A.0033s0440
I
0.793
MTR_4g027440
Medicago truncatula
MTR_4g027440
I
0.792
GLYMA01G18606
Glycine max
GLYMA01G18606
I
0.792
Thhalv10006508m.g
Eutrema salsugineum
Thhalv10006508m.g
I
0.788
Cagra.6011s0004
Capsella grandiflora
Cagra.6011s0004
I
0.788
Lus10009278.g
Linum usitatissimum
Lus10009278.g
I
0.788
Bo8g095300
Brassica oleracea
Bo8g095300
I
0.788
Bo6g077190
Brassica oleracea
Bo6g077190
I
0.788
ZAT4
Arabidopsis thaliana
AT2G45120
D
0.788
PGSC0003DMG400026020
Solanum tuberosum
PGSC0003DMG400026020
I
0.788
VIT_15s0021g02720
Vitis vinifera
VIT_15s0021g02720
I
0.788
Bostr.13158s0058
Boechera stricta
Bostr.13158s0058
I
0.788
evm.TU.supercontig_2070.1
Carica papaya
evm.TU.supercontig_2070.1
I
0.788
Gorai.001G175400
Gossypium raimondii
Gorai.001G175400
I
0.788
Bra003422
Brassica rapa
Bra003422
I
0.788
Bo4g104940
Brassica oleracea
Bo4g104940
I
0.788
ZAT9
Arabidopsis thaliana
AT3G60580
D
0.788
scaffold_503291.1
Arabidopsis lyrata
scaffold_503291.1
I
0.788
Bra007545
Brassica rapa
Bra007545
I
0.788
Solyc01g090840.2
Solanum lycopersicum
Solyc01g090840.2
I
0.788
SapurV1A.0248s0230
Salix purpurea
SapurV1A.0248s0230
I
0.788
fgenesh2_kg.4__2705__AT2G45120.1
Arabidopsis lyrata
fgenesh2_kg.4__2705__AT2G45120.1
I
0.788
Carubv10017660m.g
Capsella rubella
Carubv10017660m.g
I
0.788
Bostr.25993s0262
Boechera stricta
Bostr.25993s0262
I
0.788
Bra014483
Brassica rapa
Bra014483
I
0.788
ZAT1
Arabidopsis thaliana
AT1G02030
D
0.787
Gorai.004G164000
Gossypium raimondii
Gorai.004G164000
I
0.787
Bostr.5325s0123
Boechera stricta
Bostr.5325s0123
I
0.787
LPERR03G21480
Leersia perrieri
LPERR03G21480
I
0.783
OMERI04G17450
Oryza meridionalis
OMERI04G17450
I
0.782
GSMUA_Achr11G21040_001
Musa acuminata
GSMUA_Achr11G21040_001
I
0.782
OPUNC04G18700
Oryza punctata
OPUNC04G18700
I
0.782
ORGLA04G0180800
Oryza glaberrima
ORGLA04G0180800
I
0.782
Cagra.0239s0063
Capsella grandiflora
Cagra.0239s0063
I
0.782
ONIVA04G19260
Oryza nivara
ONIVA04G19260
I
0.782
ORUFI04G22610
Oryza rufipogon
ORUFI04G22610
I
0.782
Si010615m.g
Setaria italica
Si010615m.g
I
0.782
GRMZM2G170520
Zea mays
GRMZM2G170520
I
0.782
OS04G0552700
Oryza sativa
OS04G0552700
I
0.782
BGIOSGA016894
Oryza indica
BGIOSGA016894
I
0.782
Carubv10023569m.g
Capsella rubella
Carubv10023569m.g
I
0.782
OBART04G21020
Oryza barthii
OBART04G21020
I
0.782
Solyc03g115450.1
Solanum lycopersicum
Solyc03g115450.1
I
0.781
PGSC0003DMG400024550
Solanum tuberosum
PGSC0003DMG400024550
I
0.781
BRADI3G33100
Brachypodium distachyon
BRADI3G33100
I
0.776
Pavir.Ab02618
Panicum virgatum
Pavir.Ab02618
I
0.776
TRIUR3_29692
Triticum urartu
TRIUR3_29692
I
0.776
OB04G28040
Oryza brachyantha
OB04G28040
I
0.776
GSMUA_Achr1G01550_001
Musa acuminata
GSMUA_Achr1G01550_001
I
0.776
GSMUA_Achr4G26920_001
Musa acuminata
GSMUA_Achr4G26920_001
I
0.776
OLONG_016061
Oryza longistaminata
OLONG_016061
I
0.776
PGSC0003DMG400020929
Solanum tuberosum
PGSC0003DMG400020929
I
0.776
BGIOSGA008755
Oryza indica
BGIOSGA008755
I
0.773
Thhalv10009894m.g
Eutrema salsugineum
Thhalv10009894m.g
I
0.773
OS02G0659500
Oryza sativa
OS02G0659500
I
0.773
Lus10015888.g
Linum usitatissimum
Lus10015888.g
I
0.773
OBART02G26700
Oryza barthii
OBART02G26700
I
0.773
OMERI02G26030
Oryza meridionalis
OMERI02G26030
I
0.773
OGLUM02G27190
Oryza glumaepatula
OGLUM02G27190
I
0.773
ONIVA02G29150
Oryza nivara
ONIVA02G29150
I
0.773
ORGLA02G0229600
Oryza glaberrima
ORGLA02G0229600
I
0.773
ORUFI02G28150
Oryza rufipogon
ORUFI02G28150
I
0.773
cassava12475.valid.m1
Manihot esculenta
cassava12475.valid.m1
I
0.770
Si032711m.g
Setaria italica
Si032711m.g
I
0.770
29661.m000908
Ricinus communis
29661.m000908
I
0.770
Solyc12g088390.1
Solanum lycopersicum
Solyc12g088390.1
I
0.770
MTR_1g018420
Medicago truncatula
MTR_1g018420
I
0.770
Pavir.Ba01050
Panicum virgatum
Pavir.Ba01050
I
0.770
Pavir.J15191
Panicum virgatum
Pavir.J15191
I
0.770
VIT_03s0091g00690
Vitis vinifera
VIT_03s0091g00690
I
0.770
mgf006006m
Mimulus guttatus
mgf006006m
I
0.770
POPTR_0002s12010
Populus trichocarpa
POPTR_0002s12010
I
0.770
Sb02g038070
Sorghum bicolor
Sb02g038070
I
0.770
30170.m013751
Ricinus communis
30170.m013751
I
0.770
AC185108.3_FG011
Zea mays
AC185108.3_FG011
I
0.770
VIT_07s0129g00240
Vitis vinifera
VIT_07s0129g00240
I
0.770
Bostr.19424s0704
Boechera stricta
Bostr.19424s0704
I
0.769
Cagra.6943s0031
Capsella grandiflora
Cagra.6943s0031
I
0.769
Gorai.002G132600
Gossypium raimondii
Gorai.002G132600
I
0.769
SapurV1A.0019s0280
Salix purpurea
SapurV1A.0019s0280
I
0.769
SapurV1A.0005s0440
Salix purpurea
SapurV1A.0005s0440
I
0.769
orange1.1g038669m.g
Citrus sinensis
orange1.1g038669m.g
I
0.769
orange1.1g024499m.g
Citrus sinensis
orange1.1g024499m.g
I
0.769
SapurV1A.0845s0100
Salix purpurea
SapurV1A.0845s0100
I
0.769
Thhalv10021307m.g
Eutrema salsugineum
Thhalv10021307m.g
I
0.769
chr5.CM0200.550.nc
Lotus japonicus
chr5.CM0200.550.nc
I
0.769
chr5.CM0096.480.nc
Lotus japonicus
chr5.CM0096.480.nc
I
0.769
PK10188.1
Cannabis sativa
PK10188.1
I
0.769
MDP0000762756
Malus domestica
MDP0000762756
I
0.769
MDP0000573176
Malus domestica
MDP0000573176
I
0.769
gene02558-v1.0-hybrid
Fragaria vesca
gene02558-v1.0-hybrid
I
0.769
Eucgr.G01247
Eucalyptus grandis
Eucgr.G01247
I
0.769
Ciclev10029065m.g
Citrus clementina
Ciclev10029065m.g
I
0.769
Ciclev10002297m.g
Citrus clementina
Ciclev10002297m.g
I
0.769
Gorai.008G020700
Gossypium raimondii
Gorai.008G020700
I
0.769
Gorai.010G025200
Gossypium raimondii
Gorai.010G025200
I
0.769
MDP0000319225
Malus domestica
MDP0000319225
I
0.769
MDP0000198015
Malus domestica
MDP0000198015
I
0.769
Gorai.013G050100
Gossypium raimondii
Gorai.013G050100
I
0.769
Carubv10014391m.g
Capsella rubella
Carubv10014391m.g
I
0.769
PRUPE_ppa009924mg
Prunus persica
PRUPE_ppa009924mg
I
0.769
cassava43667.valid.m1
Manihot esculenta
cassava43667.valid.m1
I
0.769
MTR_3g102980
Medicago truncatula
MTR_3g102980
I
0.769
MTR_1g106730
Medicago truncatula
MTR_1g106730
I
0.769
Bra022436
Brassica rapa
Bra022436
I
0.769
Bo5g113850
Brassica oleracea
Bo5g113850
I
0.769
Bo1g113530
Brassica oleracea
Bo1g113530
I
0.769
BRADI1G14750
Brachypodium distachyon
BRADI1G14750
I
0.769
MLOC_54674
Hordeum vulgare
MLOC_54674
I
0.769
Bra038219
Brassica rapa
Bra038219
I
0.769
AZF2
Arabidopsis lyrata
fgenesh2_kg.3__2173__AT3G19580.2
I
0.769
BRADI4G03410
Brachypodium distachyon
BRADI4G03410
I
0.769
GLYMA04G04760
Glycine max
GLYMA04G04760
I
0.769
GLYMA06G04840
Glycine max
GLYMA06G04840
I
0.769
GLYMA17G35430
Glycine max
GLYMA17G35430
I
0.769
GLYMA14G09760
Glycine max
GLYMA14G09760
I
0.769
PGSC0003DMG400011548
Solanum tuberosum
PGSC0003DMG400011548
I
0.769
PGSC0003DMG400002383
Solanum tuberosum
PGSC0003DMG400002383
I
0.769
Ca_18364
Cicer arietinum
Ca_18364
I
0.769
Ca_01586
Cicer arietinum
Ca_01586
I
0.769
VIT_18s0001g09230
Vitis vinifera
VIT_18s0001g09230
I
0.769
TCM_007214
Theobroma cacao
TCM_007214
I
0.769
Pm005390
Prunus mume
Pm005390
I
0.769
Pm021284
Prunus mume
Pm021284
I
0.769
AZF2
Arabidopsis thaliana
AT3G19580
D
0.769
cassava35732.valid.m1
Manihot esculenta
cassava35732.valid.m1
I
0.769
28152.m000908
Ricinus communis
28152.m000908
I
0.769
Solyc01g107170.2
Solanum lycopersicum
Solyc01g107170.2
I
0.769
TCM_034720
Theobroma cacao
TCM_034720
I
0.769
POPTR_0014s01760
Populus trichocarpa
POPTR_0014s01760
I
0.769
PRUPE_ppa011060mg
Prunus persica
PRUPE_ppa011060mg
I
0.769
POPTR_0009s09250
Populus trichocarpa
POPTR_0009s09250
I
0.769
Si023013m.g
Setaria italica
Si023013m.g
I
0.769
PGSC0003DMG400041467
Solanum tuberosum
PGSC0003DMG400041467
I
0.769
GSMUA_Achr5G15450_001
Musa acuminata
GSMUA_Achr5G15450_001
I
0.767
Lus10038929.g
Linum usitatissimum
Lus10038929.g
N
0.765
GSMUA_AchrUn_randomG03030_001
Musa acuminata
GSMUA_AchrUn_randomG03030_001
I
0.765
Bo3g037560
Brassica oleracea
Bo3g037560
I
0.764
Thhalv10001538m.g
Eutrema salsugineum
Thhalv10001538m.g
I
0.764
Bra000372
Brassica rapa
Bra000372
I
0.764
Bra040325
Brassica rapa
Bra040325
I
0.764
Bo4g195370
Brassica oleracea
Bo4g195370
I
0.764
BGIOSGA010468
Oryza indica
BGIOSGA010468
I
0.760
OB03G31780
Oryza brachyantha
OB03G31780
I
0.760
ORGLA03G0210300
Oryza glaberrima
ORGLA03G0210300
I
0.760
ORUFI03G23240
Oryza rufipogon
ORUFI03G23240
I
0.760
OS03G0437200
Oryza sativa
OS03G0437200
I
0.760
mgf021789m
Mimulus guttatus
mgf021789m
I
0.760
BRADI1G16010
Brachypodium distachyon
BRADI1G16010
I
0.760
OLONG_027628
Oryza longistaminata
OLONG_027628
I
0.760
OGLUM03G23350
Oryza glumaepatula
OGLUM03G23350
I
0.760
OBART03G22570
Oryza barthii
OBART03G22570
I
0.760
PGSC0003DMG400028275
Solanum tuberosum
PGSC0003DMG400028275
I
0.759
GSMUA_Achr5G08730_001
Musa acuminata
GSMUA_Achr5G08730_001
I
0.759
GSMUA_Achr4G12160_001
Musa acuminata
GSMUA_Achr4G12160_001
I
0.758
evm.TU.supercontig_111.55
Carica papaya
evm.TU.supercontig_111.55
N
0.757