Bo4g104940 (Brassica oleracea)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bo4g104940 T081739_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.803 0.957
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.803 0.935
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.802 0.891
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.775 0.696
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo4g104940.1 C2H2 ZF 188 210
Bo4g104940.1 C2H2 ZF 239 261

Links

Other C2H2 ZF family TFs
Other Brassica oleracea TFs

192 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra007545 Brassica rapa Bra007545 I 0.827
Bo8g095300 Brassica oleracea Bo8g095300 I 0.827
Bo6g077190 Brassica oleracea Bo6g077190 I 0.827
Bra003422 Brassica rapa Bra003422 I 0.827
Bra014483 Brassica rapa Bra014483 I 0.827
Thhalv10006508m.g Eutrema salsugineum Thhalv10006508m.g I 0.827
Cagra.6011s0004 Capsella grandiflora Cagra.6011s0004 I 0.803
Bostr.13158s0058 Boechera stricta Bostr.13158s0058 I 0.803
Bostr.25993s0262 Boechera stricta Bostr.25993s0262 I 0.803
Carubv10017660m.g Capsella rubella Carubv10017660m.g I 0.803
ZAT9 Arabidopsis thaliana AT3G60580 D 0.803
fgenesh2_kg.4__2705__AT2G45120.1 Arabidopsis lyrata fgenesh2_kg.4__2705__AT2G45120.1 I 0.803
ZAT4 Arabidopsis thaliana AT2G45120 D 0.803
scaffold_503291.1 Arabidopsis lyrata scaffold_503291.1 I 0.803
Bostr.5325s0123 Boechera stricta Bostr.5325s0123 I 0.802
ZAT1 Arabidopsis thaliana AT1G02030 D 0.802
Cagra.0239s0063 Capsella grandiflora Cagra.0239s0063 I 0.798
Carubv10023569m.g Capsella rubella Carubv10023569m.g I 0.798
PGSC0003DMG400024550 Solanum tuberosum PGSC0003DMG400024550 I 0.797
POPTR_0002s14460 Populus trichocarpa POPTR_0002s14460 I 0.797
30174.m008818 Ricinus communis 30174.m008818 I 0.797
SapurV1A.0248s0230 Salix purpurea SapurV1A.0248s0230 I 0.797
VIT_15s0021g02720 Vitis vinifera VIT_15s0021g02720 I 0.797
Solyc03g115450.1 Solanum lycopersicum Solyc03g115450.1 I 0.797
cassava19892.m1 Manihot esculenta cassava19892.m1 I 0.797
Gorai.001G175400 Gossypium raimondii Gorai.001G175400 I 0.797
evm.TU.supercontig_2070.1 Carica papaya evm.TU.supercontig_2070.1 I 0.797
Gorai.004G164000 Gossypium raimondii Gorai.004G164000 I 0.796
Eucgr.D02497 Eucalyptus grandis Eucgr.D02497 I 0.796
Gorai.008G106500 Gossypium raimondii Gorai.008G106500 I 0.796
SapurV1A.0033s0440 Salix purpurea SapurV1A.0033s0440 I 0.796
BRADI1G14750 Brachypodium distachyon BRADI1G14750 I 0.793
Lus10009278.g Linum usitatissimum Lus10009278.g I 0.792
GSMUA_Achr11G21040_001 Musa acuminata GSMUA_Achr11G21040_001 I 0.792
Thhalv10009894m.g Eutrema salsugineum Thhalv10009894m.g I 0.789
MTR_4g027440 Medicago truncatula MTR_4g027440 I 0.788
GLYMA03G03950 Glycine max GLYMA03G03950 I 0.788
GLYMA01G32981 Glycine max GLYMA01G32981 I 0.788
MTR_0160s0030 Medicago truncatula MTR_0160s0030 I 0.788
Ca_23672 Cicer arietinum Ca_23672 I 0.788
cassava14164.m1 Manihot esculenta cassava14164.m1 I 0.788
Ciclev10020499m.g Citrus clementina Ciclev10020499m.g I 0.788
orange1.1g044606m.g Citrus sinensis orange1.1g044606m.g I 0.788
mgf021094m Mimulus guttatus mgf021094m I 0.787
OMERI04G17450 Oryza meridionalis OMERI04G17450 I 0.786
OLONG_016061 Oryza longistaminata OLONG_016061 I 0.786
OB04G28040 Oryza brachyantha OB04G28040 I 0.786
ONIVA04G19260 Oryza nivara ONIVA04G19260 I 0.786
OBART04G21020 Oryza barthii OBART04G21020 I 0.786
ORGLA04G0180800 Oryza glaberrima ORGLA04G0180800 I 0.786
Pavir.Ab02618 Panicum virgatum Pavir.Ab02618 I 0.786
OS04G0552700 Oryza sativa OS04G0552700 I 0.786
ORUFI04G22610 Oryza rufipogon ORUFI04G22610 I 0.786
Si010615m.g Setaria italica Si010615m.g I 0.786
OPUNC04G18700 Oryza punctata OPUNC04G18700 I 0.786
PGSC0003DMG400020929 Solanum tuberosum PGSC0003DMG400020929 I 0.786
BGIOSGA016894 Oryza indica BGIOSGA016894 I 0.786
GRMZM2G170520 Zea mays GRMZM2G170520 I 0.786
GSMUA_Achr4G26920_001 Musa acuminata GSMUA_Achr4G26920_001 I 0.786
GSMUA_Achr1G01550_001 Musa acuminata GSMUA_Achr1G01550_001 I 0.786
BRADI3G33100 Brachypodium distachyon BRADI3G33100 I 0.786
mgf017082m Mimulus guttatus mgf017082m I 0.782
GLYMA01G18606 Glycine max GLYMA01G18606 I 0.782
Bra000372 Brassica rapa Bra000372 I 0.779
Thhalv10001538m.g Eutrema salsugineum Thhalv10001538m.g I 0.779
Eucgr.B02396 Eucalyptus grandis Eucgr.B02396 I 0.779
Bo4g195370 Brassica oleracea Bo4g195370 I 0.779
Bra040325 Brassica rapa Bra040325 I 0.779
Bo3g037560 Brassica oleracea Bo3g037560 I 0.779
Eucgr.K00165 Eucalyptus grandis Eucgr.K00165 I 0.777
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.776
Solyc12g088390.1 Solanum lycopersicum Solyc12g088390.1 I 0.776
TRIUR3_29692 Triticum urartu TRIUR3_29692 I 0.776
OBART02G26700 Oryza barthii OBART02G26700 I 0.776
mgf006006m Mimulus guttatus mgf006006m I 0.776
29661.m000908 Ricinus communis 29661.m000908 I 0.776
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.776
Lus10015888.g Linum usitatissimum Lus10015888.g I 0.776
Bo5g052290 Brassica oleracea Bo5g052290 I 0.776
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.776
GSMUA_Achr5G15450_001 Musa acuminata GSMUA_Achr5G15450_001 I 0.776
cassava12475.valid.m1 Manihot esculenta cassava12475.valid.m1 I 0.776
BGIOSGA008755 Oryza indica BGIOSGA008755 I 0.776
OMERI02G26030 Oryza meridionalis OMERI02G26030 I 0.776
30170.m013751 Ricinus communis 30170.m013751 I 0.776
ONIVA02G29150 Oryza nivara ONIVA02G29150 I 0.776
ORGLA02G0229600 Oryza glaberrima ORGLA02G0229600 I 0.776
OGLUM02G27190 Oryza glumaepatula OGLUM02G27190 I 0.776
Bra032845 Brassica rapa Bra032845 I 0.776
OS02G0659500 Oryza sativa OS02G0659500 I 0.776
ORUFI02G28150 Oryza rufipogon ORUFI02G28150 I 0.776
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I 0.776
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.775
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.775
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.775
Bra022436 Brassica rapa Bra022436 I 0.775
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.775
cassava43667.valid.m1 Manihot esculenta cassava43667.valid.m1 I 0.775
Gorai.010G025200 Gossypium raimondii Gorai.010G025200 I 0.775
MDP0000762756 Malus domestica MDP0000762756 I 0.775
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I 0.775
Bo1g113530 Brassica oleracea Bo1g113530 I 0.775
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.775
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.775
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.775
Gorai.002G132600 Gossypium raimondii Gorai.002G132600 I 0.775
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I 0.775
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.775
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I 0.775
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.775
PK10188.1 Cannabis sativa PK10188.1 I 0.775
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I 0.775
Bo5g113850 Brassica oleracea Bo5g113850 I 0.775
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.775
AZF2 Arabidopsis thaliana AT3G19580 D 0.775
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.775
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.775
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.775
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.775
Ca_01586 Cicer arietinum Ca_01586 I 0.775
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.775
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.775
GLYMA10G40400 Glycine max GLYMA10G40400 I 0.775
PGSC0003DMG400041467 Solanum tuberosum PGSC0003DMG400041467 I 0.775
28152.m000908 Ricinus communis 28152.m000908 I 0.775
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.775
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.775
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I 0.775
PGSC0003DMG400011548 Solanum tuberosum PGSC0003DMG400011548 I 0.775
PGSC0003DMG400002383 Solanum tuberosum PGSC0003DMG400002383 I 0.775
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.775
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.775
MDP0000198015 Malus domestica MDP0000198015 I 0.775
MDP0000319225 Malus domestica MDP0000319225 I 0.775
MDP0000573176 Malus domestica MDP0000573176 I 0.775
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.775
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.775
PRUPE_ppa011060mg Prunus persica PRUPE_ppa011060mg I 0.775
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.775
Pm005390 Prunus mume Pm005390 I 0.775
Bra038219 Brassica rapa Bra038219 I 0.775
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.775
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.775
Ca_18364 Cicer arietinum Ca_18364 I 0.775
TCM_034720 Theobroma cacao TCM_034720 I 0.775
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.775
Ca_05641 Cicer arietinum Ca_05641 I 0.775
Pm021284 Prunus mume Pm021284 I 0.775
TCM_007214 Theobroma cacao TCM_007214 I 0.775
AT5G61470 Arabidopsis thaliana AT5G61470 N 0.774
Pm000815 Prunus mume Pm000815 I 0.774
Eucgr.B02394 Eucalyptus grandis Eucgr.B02394 I 0.774
PK27255.1 Cannabis sativa PK27255.1 I 0.774
evm.TU.supercontig_190.30 Carica papaya evm.TU.supercontig_190.30 I 0.774
PGSC0003DMG400026020 Solanum tuberosum PGSC0003DMG400026020 I 0.773
Solyc01g090840.2 Solanum lycopersicum Solyc01g090840.2 I 0.773
MLOC_54674 Hordeum vulgare MLOC_54674 I 0.769
MLOC_51405 Hordeum vulgare MLOC_51405 I 0.769
Si023013m.g Setaria italica Si023013m.g I 0.769
OS12G0583700 Oryza sativa OS12G0583700 I 0.769
BRADI4G03410 Brachypodium distachyon BRADI4G03410 I 0.769
OPUNC12G15600 Oryza punctata OPUNC12G15600 I 0.769
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I 0.769
GSMUA_AchrUn_randomG03030_001 Musa acuminata GSMUA_AchrUn_randomG03030_001 I 0.768
PRUPE_ppa012242mg Prunus persica PRUPE_ppa012242mg I 0.768
GSMUA_Achr1G06720_001 Musa acuminata GSMUA_Achr1G06720_001 I 0.767
cassava47027.m1 Manihot esculenta cassava47027.m1 N 0.766
PGSC0003DMG400028275 Solanum tuberosum PGSC0003DMG400028275 I 0.765
GSMUA_Achr4G12160_001 Musa acuminata GSMUA_Achr4G12160_001 I 0.762
mgf021789m Mimulus guttatus mgf021789m I 0.760
GSMUA_Achr5G08730_001 Musa acuminata GSMUA_Achr5G08730_001 I 0.759
LPERR03G21480 Leersia perrieri LPERR03G21480 I 0.759
Thhalv10017375m.g Eutrema salsugineum Thhalv10017375m.g I 0.756
Thhalv10014884m.g Eutrema salsugineum Thhalv10014884m.g I 0.756
scaffold_401325.1 Arabidopsis lyrata scaffold_401325.1 I 0.756
Bo4g166690 Brassica oleracea Bo4g166690 I 0.756
Bo9g140820 Brassica oleracea Bo9g140820 I 0.756
Bra006691 Brassica rapa Bra006691 I 0.756
Bo4g069230 Brassica oleracea Bo4g069230 I 0.756
Bo3g017740 Brassica oleracea Bo3g017740 I 0.756
AT2G28710 Arabidopsis thaliana AT2G28710 I 0.756
Bo2g025350 Brassica oleracea Bo2g025350 I 0.756
Bra006692 Brassica rapa Bra006692 I 0.756
Bra011931 Brassica rapa Bra011931 I 0.756
Bostr.27991s0045 Boechera stricta Bostr.27991s0045 I 0.756
Cagra.1317s0034 Capsella grandiflora Cagra.1317s0034 I 0.756
Cagra.8274s0001 Capsella grandiflora Cagra.8274s0001 I 0.756
Bostr.26833s0254 Boechera stricta Bostr.26833s0254 I 0.756
TCM_014903 Theobroma cacao TCM_014903 I 0.756
Bra020284 Brassica rapa Bra020284 I 0.756
Bra035678 Brassica rapa Bra035678 I 0.756
Carubv10024179m.g Capsella rubella Carubv10024179m.g I 0.756