Si023013m.g (Setaria italica)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Si023013m.g T128680_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.787 0.826
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.770 0.674
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.769 0.674
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.769 0.674
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.768 0.783
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.766 0.761
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.766 0.761
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.766 0.761
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Si023013m C2H2 ZF 99 121
Si023013m C2H2 ZF 162 184

Links

Other C2H2 ZF family TFs
Other Setaria italica TFs

217 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OPUNC12G15600 Oryza punctata OPUNC12G15600 I 0.803
MLOC_54674 Hordeum vulgare MLOC_54674 I 0.803
OS12G0583700 Oryza sativa OS12G0583700 I 0.803
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I 0.798
BRADI1G14750 Brachypodium distachyon BRADI1G14750 I 0.798
Ca_01586 Cicer arietinum Ca_01586 I 0.792
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.792
Ca_18364 Cicer arietinum Ca_18364 I 0.792
Pm005390 Prunus mume Pm005390 I 0.792
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.792
Pm021284 Prunus mume Pm021284 I 0.792
TCM_034720 Theobroma cacao TCM_034720 I 0.792
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.792
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.792
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.792
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.792
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.792
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.792
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.792
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.792
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.792
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.792
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.792
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.792
MDP0000762756 Malus domestica MDP0000762756 I 0.792
MDP0000573176 Malus domestica MDP0000573176 I 0.792
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.792
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.792
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.792
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.792
PK10188.1 Cannabis sativa PK10188.1 I 0.792
MDP0000319225 Malus domestica MDP0000319225 I 0.792
MDP0000198015 Malus domestica MDP0000198015 I 0.792
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.792
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.792
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.792
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.792
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I 0.792
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.792
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.792
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.792
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.792
TCM_007214 Theobroma cacao TCM_007214 I 0.792
Bo5g113850 Brassica oleracea Bo5g113850 I 0.792
Bo1g113530 Brassica oleracea Bo1g113530 I 0.792
Bra022436 Brassica rapa Bra022436 I 0.792
Bra038219 Brassica rapa Bra038219 I 0.792
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.791
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.791
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.790
LPERR03G21480 Leersia perrieri LPERR03G21480 I 0.788
GSMUA_Achr5G08730_001 Musa acuminata GSMUA_Achr5G08730_001 I 0.788
MLOC_51405 Hordeum vulgare MLOC_51405 I 0.788
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I 0.787
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I 0.787
Ca_05641 Cicer arietinum Ca_05641 I 0.787
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I 0.787
GLYMA10G40400 Glycine max GLYMA10G40400 I 0.787
AZF2 Arabidopsis thaliana AT3G19580 D 0.787
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I 0.787
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I 0.786
30170.m013751 Ricinus communis 30170.m013751 I 0.785
PRUPE_ppa011060mg Prunus persica PRUPE_ppa011060mg I 0.782
PGSC0003DMG400011548 Solanum tuberosum PGSC0003DMG400011548 I 0.782
Gorai.002G132600 Gossypium raimondii Gorai.002G132600 I 0.782
PGSC0003DMG400002383 Solanum tuberosum PGSC0003DMG400002383 I 0.782
Gorai.010G025200 Gossypium raimondii Gorai.010G025200 I 0.782
PGSC0003DMG400041467 Solanum tuberosum PGSC0003DMG400041467 I 0.782
mgf006006m Mimulus guttatus mgf006006m I 0.781
Solyc12g088390.1 Solanum lycopersicum Solyc12g088390.1 I 0.781
BRADI4G03410 Brachypodium distachyon BRADI4G03410 I 0.781
cassava43667.valid.m1 Manihot esculenta cassava43667.valid.m1 I 0.777
28152.m000908 Ricinus communis 28152.m000908 I 0.777
Gorai.004G164000 Gossypium raimondii Gorai.004G164000 I 0.776
cassava12475.valid.m1 Manihot esculenta cassava12475.valid.m1 I 0.776
VIT_15s0021g02720 Vitis vinifera VIT_15s0021g02720 I 0.775
Ca_23672 Cicer arietinum Ca_23672 I 0.775
Ciclev10020499m.g Citrus clementina Ciclev10020499m.g I 0.775
BRADI3G33100 Brachypodium distachyon BRADI3G33100 I 0.775
orange1.1g044606m.g Citrus sinensis orange1.1g044606m.g I 0.775
GLYMA03G03950 Glycine max GLYMA03G03950 I 0.775
GLYMA01G32981 Glycine max GLYMA01G32981 I 0.775
GLYMA01G18606 Glycine max GLYMA01G18606 I 0.775
evm.TU.supercontig_2070.1 Carica papaya evm.TU.supercontig_2070.1 I 0.775
MTR_0160s0030 Medicago truncatula MTR_0160s0030 I 0.775
Gorai.001G175400 Gossypium raimondii Gorai.001G175400 I 0.775
PGSC0003DMG400020929 Solanum tuberosum PGSC0003DMG400020929 I 0.774
29661.m000908 Ricinus communis 29661.m000908 I 0.774
Gorai.008G106500 Gossypium raimondii Gorai.008G106500 I 0.774
mgf021789m Mimulus guttatus mgf021789m I 0.771
BRADI4G03340 Brachypodium distachyon BRADI4G03340 I 0.770
Bostr.5325s0123 Boechera stricta Bostr.5325s0123 I 0.770
ZAT1 Arabidopsis thaliana AT1G02030 D 0.770
Solyc03g115450.1 Solanum lycopersicum Solyc03g115450.1 I 0.770
PGSC0003DMG400024550 Solanum tuberosum PGSC0003DMG400024550 I 0.770
Carubv10017660m.g Capsella rubella Carubv10017660m.g I 0.769
30174.m008818 Ricinus communis 30174.m008818 I 0.769
Carubv10023569m.g Capsella rubella Carubv10023569m.g I 0.769
Bra007545 Brassica rapa Bra007545 I 0.769
Bo4g104940 Brassica oleracea Bo4g104940 I 0.769
Thhalv10006508m.g Eutrema salsugineum Thhalv10006508m.g I 0.769
Bra003422 Brassica rapa Bra003422 I 0.769
ZAT4 Arabidopsis thaliana AT2G45120 D 0.769
Pavir.Ab02618 Panicum virgatum Pavir.Ab02618 I 0.769
BGIOSGA016894 Oryza indica BGIOSGA016894 I 0.769
AZF3 Arabidopsis thaliana AT5G43170 I 0.769
Bostr.13158s0058 Boechera stricta Bostr.13158s0058 I 0.769
Bostr.25993s0262 Boechera stricta Bostr.25993s0262 I 0.769
Lus10009278.g Linum usitatissimum Lus10009278.g I 0.769
ZAT9 Arabidopsis thaliana AT3G60580 D 0.769
Cagra.6011s0004 Capsella grandiflora Cagra.6011s0004 I 0.769
SapurV1A.0248s0230 Salix purpurea SapurV1A.0248s0230 I 0.769
Bo8g095300 Brassica oleracea Bo8g095300 I 0.769
Cagra.0239s0063 Capsella grandiflora Cagra.0239s0063 I 0.769
Bo6g077190 Brassica oleracea Bo6g077190 I 0.769
mgf017082m Mimulus guttatus mgf017082m I 0.769
cassava19892.m1 Manihot esculenta cassava19892.m1 I 0.769
cassava14164.m1 Manihot esculenta cassava14164.m1 I 0.769
OLONG_016061 Oryza longistaminata OLONG_016061 I 0.769
ORUFI04G22610 Oryza rufipogon ORUFI04G22610 I 0.769
GSMUA_Achr1G01550_001 Musa acuminata GSMUA_Achr1G01550_001 I 0.769
OS04G0552700 Oryza sativa OS04G0552700 I 0.769
GRMZM2G170520 Zea mays GRMZM2G170520 I 0.769
Bra014483 Brassica rapa Bra014483 I 0.769
POPTR_0002s14460 Populus trichocarpa POPTR_0002s14460 I 0.769
ORGLA04G0180800 Oryza glaberrima ORGLA04G0180800 I 0.769
GSMUA_Achr4G26920_001 Musa acuminata GSMUA_Achr4G26920_001 I 0.769
OBART04G21020 Oryza barthii OBART04G21020 I 0.769
OMERI04G17450 Oryza meridionalis OMERI04G17450 I 0.769
OB04G28040 Oryza brachyantha OB04G28040 I 0.769
ONIVA04G19260 Oryza nivara ONIVA04G19260 I 0.769
OPUNC04G18700 Oryza punctata OPUNC04G18700 I 0.769
MTR_4g027440 Medicago truncatula MTR_4g027440 I 0.769
scaffold_503291.1 Arabidopsis lyrata scaffold_503291.1 I 0.769
GSMUA_Achr11G21040_001 Musa acuminata GSMUA_Achr11G21040_001 I 0.769
Si010615m.g Setaria italica Si010615m.g I 0.769
AZF3 Arabidopsis lyrata scaffold_800768.1 I 0.769
TRIUR3_29692 Triticum urartu TRIUR3_29692 I 0.769
fgenesh2_kg.4__2705__AT2G45120.1 Arabidopsis lyrata fgenesh2_kg.4__2705__AT2G45120.1 I 0.769
Bra009464 Brassica rapa Bra009464 I 0.768
ZAT6 Arabidopsis thaliana AT5G04340 D 0.768
Eucgr.D02497 Eucalyptus grandis Eucgr.D02497 I 0.768
Cucsa.352740 Cucumis sativus Cucsa.352740 I 0.768
GSMUA_Achr5G28550_001 Musa acuminata GSMUA_Achr5G28550_001 I 0.768
Bo9g181170 Brassica oleracea Bo9g181170 I 0.768
SapurV1A.0033s0440 Salix purpurea SapurV1A.0033s0440 I 0.768
chr1.LjT45O14.140.nd Lotus japonicus chr1.LjT45O14.140.nd I 0.768
chr1.CM0050.50.nc Lotus japonicus chr1.CM0050.50.nc I 0.768
Bostr.2128s0015 Boechera stricta Bostr.2128s0015 I 0.768
Bostr.3148s0159 Boechera stricta Bostr.3148s0159 I 0.768
C2H2 Arabidopsis lyrata scaffold_600374.1 I 0.768
Thhalv10014546m.g Eutrema salsugineum Thhalv10014546m.g I 0.768
Gorai.005G232300 Gossypium raimondii Gorai.005G232300 I 0.768
mgf021094m Mimulus guttatus mgf021094m I 0.768
AMTR_s00137p00104280 Amborella trichopoda AMTR_s00137p00104280 I 0.767
ZAT10 Arabidopsis thaliana AT1G27730 D 0.766
Bo5g052290 Brassica oleracea Bo5g052290 I 0.766
Bra032845 Brassica rapa Bra032845 I 0.766
Bostr.15697s0099 Boechera stricta Bostr.15697s0099 I 0.766
STZ Arabidopsis lyrata fgenesh2_kg.1__2932__AT1G27730.1 I 0.766
Bo7g048650 Brassica oleracea Bo7g048650 I 0.766
PGSC0003DMG400028275 Solanum tuberosum PGSC0003DMG400028275 I 0.766
Bra010922 Brassica rapa Bra010922 I 0.766
Bo3g142840 Brassica oleracea Bo3g142840 I 0.766
Bra033666 Brassica rapa Bra033666 I 0.763
Gorai.013G265200 Gossypium raimondii Gorai.013G265200 I 0.763
Gorai.003G136200 Gossypium raimondii Gorai.003G136200 I 0.763
Bo4g069230 Brassica oleracea Bo4g069230 I 0.763
Bra011931 Brassica rapa Bra011931 I 0.763
TCM_041899 Theobroma cacao TCM_041899 I 0.763
Carubv10024179m.g Capsella rubella Carubv10024179m.g I 0.763
Bo7g065200 Brassica oleracea Bo7g065200 I 0.763
Bostr.27991s0045 Boechera stricta Bostr.27991s0045 I 0.763
Thhalv10017375m.g Eutrema salsugineum Thhalv10017375m.g I 0.763
AT2G28710 Arabidopsis thaliana AT2G28710 I 0.763
scaffold_401325.1 Arabidopsis lyrata scaffold_401325.1 I 0.763
Cagra.8274s0001 Capsella grandiflora Cagra.8274s0001 I 0.763
Cagra.9217s0012 Capsella grandiflora Cagra.9217s0012 I 0.763
orange1.1g031430m.g Citrus sinensis orange1.1g031430m.g I 0.763
Bra035678 Brassica rapa Bra035678 I 0.763
Ciclev10029464m.g Citrus clementina Ciclev10029464m.g I 0.763
Carubv10001868m.g Capsella rubella Carubv10001868m.g I 0.763
Bo4g166690 Brassica oleracea Bo4g166690 I 0.763
Eucgr.B02399 Eucalyptus grandis Eucgr.B02399 I 0.762
Eucgr.B02392 Eucalyptus grandis Eucgr.B02392 I 0.762
Eucgr.B02395 Eucalyptus grandis Eucgr.B02395 I 0.762
Eucgr.L02150 Eucalyptus grandis Eucgr.L02150 I 0.762
Eucgr.B02390 Eucalyptus grandis Eucgr.B02390 I 0.762
cassava42054.valid.m1 Manihot esculenta cassava42054.valid.m1 I 0.762
29154.m000218 Ricinus communis 29154.m000218 I 0.762
cassava16287.m1 Manihot esculenta cassava16287.m1 I 0.762
evm.TU.supercontig_163.32 Carica papaya evm.TU.supercontig_163.32 I 0.762
Eucgr.B02391 Eucalyptus grandis Eucgr.B02391 I 0.762
gene13962-v1.0-hybrid Fragaria vesca gene13962-v1.0-hybrid I 0.762
gene28452-v1.0-hybrid Fragaria vesca gene28452-v1.0-hybrid I 0.762
gene13959-v1.0-hybrid Fragaria vesca gene13959-v1.0-hybrid I 0.762
TCM_000780 Theobroma cacao TCM_000780 I 0.761
Eucgr.K00165 Eucalyptus grandis Eucgr.K00165 I 0.760
OS02G0659500 Oryza sativa OS02G0659500 I 0.759
ORGLA02G0229600 Oryza glaberrima ORGLA02G0229600 I 0.759
OGLUM02G27190 Oryza glumaepatula OGLUM02G27190 I 0.759
OBART02G26700 Oryza barthii OBART02G26700 I 0.759
ORUFI02G28150 Oryza rufipogon ORUFI02G28150 I 0.759
GSMUA_Achr5G15450_001 Musa acuminata GSMUA_Achr5G15450_001 I 0.759
ONIVA02G29150 Oryza nivara ONIVA02G29150 I 0.759
Lus10015888.g Linum usitatissimum Lus10015888.g I 0.759
BGIOSGA008755 Oryza indica BGIOSGA008755 I 0.759
OMERI02G26030 Oryza meridionalis OMERI02G26030 I 0.759
fgenesh1_pm.C_scaffold_1003183 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1003183 I 0.758
MLOC_70662 Hordeum vulgare MLOC_70662 I 0.758
Bostr.26675s0176 Boechera stricta Bostr.26675s0176 I 0.758
PGSC0003DMG400034322 Solanum tuberosum PGSC0003DMG400034322 I 0.758
Bra012914 Brassica rapa Bra012914 I 0.757
Bra029985 Brassica rapa Bra029985 I 0.757
Bo1g081350 Brassica oleracea Bo1g081350 I 0.757
Thhalv10010909m.g Eutrema salsugineum Thhalv10010909m.g I 0.757
Thhalv10009894m.g Eutrema salsugineum Thhalv10009894m.g I 0.756