Bostr.26675s0176 (Boechera stricta)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Bostr.26675s0176 T142603_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.793 0.804
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.788 0.826
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.786 0.761
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.786 0.761
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.786 0.761
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.776 0.739
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.776 0.739
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.776 0.739
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.776 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.26675s0176.1.p C2H2 ZF 192 214
Bostr.26675s0176.1.p C2H2 ZF 246 268

Links

Other C2H2 ZF family TFs
Other Boechera stricta TFs

178 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra018817 Brassica rapa Bra018817 I 0.821
cassava32957.m1 Manihot esculenta cassava32957.m1 I 0.819
Gorai.005G232300 Gossypium raimondii Gorai.005G232300 I 0.817
Bo1g081350 Brassica oleracea Bo1g081350 I 0.805
Bra012914 Brassica rapa Bra012914 I 0.805
Thhalv10010909m.g Eutrema salsugineum Thhalv10010909m.g I 0.805
Bra029985 Brassica rapa Bra029985 I 0.805
PGSC0003DMG400011548 Solanum tuberosum PGSC0003DMG400011548 I 0.802
Gorai.002G132600 Gossypium raimondii Gorai.002G132600 I 0.802
Gorai.010G025200 Gossypium raimondii Gorai.010G025200 I 0.802
cassava12475.valid.m1 Manihot esculenta cassava12475.valid.m1 I 0.798
28152.m000908 Ricinus communis 28152.m000908 I 0.797
fgenesh1_pm.C_scaffold_1003183 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1003183 I 0.797
cassava43667.valid.m1 Manihot esculenta cassava43667.valid.m1 I 0.797
PGSC0003DMG400041467 Solanum tuberosum PGSC0003DMG400041467 I 0.797
Solyc12g088390.1 Solanum lycopersicum Solyc12g088390.1 I 0.795
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.794
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.794
Pm021284 Prunus mume Pm021284 I 0.793
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.793
Cucsa.352740 Cucumis sativus Cucsa.352740 I 0.793
Pm005390 Prunus mume Pm005390 I 0.793
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.793
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.793
PRUPE_ppa011060mg Prunus persica PRUPE_ppa011060mg I 0.793
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.793
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.793
C2H2 Arabidopsis lyrata scaffold_600374.1 I 0.793
TCM_007214 Theobroma cacao TCM_007214 I 0.793
Ca_01586 Cicer arietinum Ca_01586 I 0.793
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.793
Ca_18364 Cicer arietinum Ca_18364 I 0.793
Bostr.3148s0159 Boechera stricta Bostr.3148s0159 I 0.793
MDP0000573176 Malus domestica MDP0000573176 I 0.793
MDP0000319225 Malus domestica MDP0000319225 I 0.793
MDP0000198015 Malus domestica MDP0000198015 I 0.793
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.793
MDP0000762756 Malus domestica MDP0000762756 I 0.793
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.793
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.793
PK10188.1 Cannabis sativa PK10188.1 I 0.793
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.793
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.793
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.793
chr1.CM0050.50.nc Lotus japonicus chr1.CM0050.50.nc I 0.793
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.793
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.793
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.793
Thhalv10014546m.g Eutrema salsugineum Thhalv10014546m.g I 0.793
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.793
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.793
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.793
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.793
chr1.LjT45O14.140.nd Lotus japonicus chr1.LjT45O14.140.nd I 0.793
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.793
Bostr.2128s0015 Boechera stricta Bostr.2128s0015 I 0.793
TCM_034720 Theobroma cacao TCM_034720 I 0.793
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.793
Bra038219 Brassica rapa Bra038219 I 0.793
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.793
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.793
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.793
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.793
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.793
Bra022436 Brassica rapa Bra022436 I 0.793
Bo1g113530 Brassica oleracea Bo1g113530 I 0.793
ZAT6 Arabidopsis thaliana AT5G04340 D 0.793
Bra009464 Brassica rapa Bra009464 I 0.793
Bo5g113850 Brassica oleracea Bo5g113850 I 0.793
Bo9g181170 Brassica oleracea Bo9g181170 I 0.793
Bo7g048650 Brassica oleracea Bo7g048650 I 0.791
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.791
Bostr.15697s0099 Boechera stricta Bostr.15697s0099 I 0.791
PGSC0003DMG400034322 Solanum tuberosum PGSC0003DMG400034322 I 0.790
Cla001400 Citrullus lanatus Cla001400 I 0.789
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I 0.788
Bra033666 Brassica rapa Bra033666 I 0.788
Carubv10001868m.g Capsella rubella Carubv10001868m.g I 0.788
Bo7g065200 Brassica oleracea Bo7g065200 I 0.788
AZF2 Arabidopsis thaliana AT3G19580 D 0.788
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I 0.788
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I 0.788
PGSC0003DMG400002383 Solanum tuberosum PGSC0003DMG400002383 I 0.788
Cagra.9217s0012 Capsella grandiflora Cagra.9217s0012 I 0.788
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I 0.788
30170.m013751 Ricinus communis 30170.m013751 I 0.786
STZ Arabidopsis lyrata fgenesh2_kg.1__2932__AT1G27730.1 I 0.786
Bra010922 Brassica rapa Bra010922 I 0.786
mgf006006m Mimulus guttatus mgf006006m I 0.786
Bo3g142840 Brassica oleracea Bo3g142840 I 0.786
TCM_000780 Theobroma cacao TCM_000780 I 0.786
ZAT10 Arabidopsis thaliana AT1G27730 D 0.786
GSMUA_Achr2G13410_001 Musa acuminata GSMUA_Achr2G13410_001 I 0.785
30147.m014242 Ricinus communis 30147.m014242 I 0.783
Ciclev10007101m.g Citrus clementina Ciclev10007101m.g I 0.783
POPTR_0001s00800 Populus trichocarpa POPTR_0001s00800 I 0.783
OB03G42170 Oryza brachyantha OB03G42170 I 0.783
cassava21316.m1 Manihot esculenta cassava21316.m1 I 0.782
SapurV1A.1544s0070 Salix purpurea SapurV1A.1544s0070 I 0.782
SapurV1A.1944s0060 Salix purpurea SapurV1A.1944s0060 I 0.782
AZF3 Arabidopsis thaliana AT5G43170 I 0.781
AZF3 Arabidopsis lyrata scaffold_800768.1 I 0.781
AMTR_s00137p00104280 Amborella trichopoda AMTR_s00137p00104280 I 0.780
Cagra.0239s0063 Capsella grandiflora Cagra.0239s0063 I 0.776
Carubv10017660m.g Capsella rubella Carubv10017660m.g I 0.776
Cagra.6011s0004 Capsella grandiflora Cagra.6011s0004 I 0.776
scaffold_503291.1 Arabidopsis lyrata scaffold_503291.1 I 0.776
evm.TU.supercontig_6.32 Carica papaya evm.TU.supercontig_6.32 I 0.776
Carubv10023569m.g Capsella rubella Carubv10023569m.g I 0.776
Bo9g019120 Brassica oleracea Bo9g019120 I 0.776
ZAT9 Arabidopsis thaliana AT3G60580 D 0.776
Thhalv10001538m.g Eutrema salsugineum Thhalv10001538m.g I 0.776
AZF1 Arabidopsis thaliana AT5G67450 D 0.776
MTR_4g027440 Medicago truncatula MTR_4g027440 I 0.776
Bo2g168030 Brassica oleracea Bo2g168030 I 0.776
Bo3g037560 Brassica oleracea Bo3g037560 I 0.776
ZAT4 Arabidopsis thaliana AT2G45120 D 0.776
Bo4g195370 Brassica oleracea Bo4g195370 I 0.776
Bra037845 Brassica rapa Bra037845 I 0.776
Bra000372 Brassica rapa Bra000372 I 0.776
Bra031834 Brassica rapa Bra031834 I 0.776
Bostr.13158s0058 Boechera stricta Bostr.13158s0058 I 0.776
Bostr.25993s0262 Boechera stricta Bostr.25993s0262 I 0.776
Bra040325 Brassica rapa Bra040325 I 0.776
fgenesh2_kg.4__2705__AT2G45120.1 Arabidopsis lyrata fgenesh2_kg.4__2705__AT2G45120.1 I 0.776
Cucsa.219210 Cucumis sativus Cucsa.219210 I 0.773
Solyc01g107170.2 Solanum lycopersicum Solyc01g107170.2 I 0.772
PGSC0003DMG400028275 Solanum tuberosum PGSC0003DMG400028275 I 0.772
MLOC_51405 Hordeum vulgare MLOC_51405 I 0.772
29661.m000908 Ricinus communis 29661.m000908 I 0.772
SapurV1A.0248s0230 Salix purpurea SapurV1A.0248s0230 I 0.770
GLYMA01G18606 Glycine max GLYMA01G18606 I 0.770
Gorai.001G175400 Gossypium raimondii Gorai.001G175400 I 0.770
Cla022966 Citrullus lanatus Cla022966 I 0.770
Lus10009278.g Linum usitatissimum Lus10009278.g I 0.770
GLYMA01G32981 Glycine max GLYMA01G32981 I 0.770
GLYMA03G03950 Glycine max GLYMA03G03950 I 0.770
Cucsa.395710 Cucumis sativus Cucsa.395710 I 0.770
MTR_0160s0030 Medicago truncatula MTR_0160s0030 I 0.770
orange1.1g044606m.g Citrus sinensis orange1.1g044606m.g I 0.770
POPTR_0002s14460 Populus trichocarpa POPTR_0002s14460 I 0.770
Ciclev10020499m.g Citrus clementina Ciclev10020499m.g I 0.770
Ca_23672 Cicer arietinum Ca_23672 I 0.770
VIT_15s0021g02720 Vitis vinifera VIT_15s0021g02720 I 0.770
evm.TU.supercontig_2070.1 Carica papaya evm.TU.supercontig_2070.1 I 0.770
Lus10038929.g Linum usitatissimum Lus10038929.g N 0.769
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I 0.769
SapurV1A.0033s0440 Salix purpurea SapurV1A.0033s0440 I 0.769
Gorai.004G164000 Gossypium raimondii Gorai.004G164000 I 0.769
BRADI4G03340 Brachypodium distachyon BRADI4G03340 I 0.767
Bra032845 Brassica rapa Bra032845 I 0.767
Bo5g052290 Brassica oleracea Bo5g052290 I 0.767
Thhalv10005323m.g Eutrema salsugineum Thhalv10005323m.g N 0.766
GRMZM2G455889 Zea mays GRMZM2G455889 I 0.766
GLYMA10G40400 Glycine max GLYMA10G40400 I 0.764
Ca_05641 Cicer arietinum Ca_05641 I 0.764
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I 0.764
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I 0.763
BRADI1G14750 Brachypodium distachyon BRADI1G14750 I 0.763
VIT_06s0009g02470 Vitis vinifera VIT_06s0009g02470 I 0.762
ZAT11 Arabidopsis thaliana AT2G37430 I 0.761
Bra039806 Brassica rapa Bra039806 I 0.761
PGSC0003DMG400015532 Solanum tuberosum PGSC0003DMG400015532 I 0.760
PGSC0003DMG400015557 Solanum tuberosum PGSC0003DMG400015557 I 0.760
Lus10015888.g Linum usitatissimum Lus10015888.g I 0.760
PGSC0003DMG400015534 Solanum tuberosum PGSC0003DMG400015534 I 0.760
PGSC0003DMG400015531 Solanum tuberosum PGSC0003DMG400015531 I 0.760
PGSC0003DMG400015533 Solanum tuberosum PGSC0003DMG400015533 I 0.760
Eucgr.A01232 Eucalyptus grandis Eucgr.A01232 I 0.759
Eucgr.B02397 Eucalyptus grandis Eucgr.B02397 I 0.759
Gorai.010G202400 Gossypium raimondii Gorai.010G202400 I 0.759
MDP0000237150 Malus domestica MDP0000237150 I 0.759
Si023013m.g Setaria italica Si023013m.g I 0.758
OS12G0583700 Oryza sativa OS12G0583700 I 0.758
PGSC0003DMG400045547 Solanum tuberosum PGSC0003DMG400045547 I 0.758
OPUNC12G15600 Oryza punctata OPUNC12G15600 I 0.758
MLOC_54674 Hordeum vulgare MLOC_54674 I 0.758
BRADI4G03410 Brachypodium distachyon BRADI4G03410 I 0.756