Bra018817 (Brassica rapa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bra018817 T081926_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.788 0.826
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.788 0.783
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.781 0.783
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.781 0.783
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.781 0.783
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.776 0.761
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.776 0.761
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.775 0.739
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.775 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra018817.1-P C2H2 ZF 185 207
Bra018817.1-P C2H2 ZF 238 260

Links

Other C2H2 ZF family TFs
Other Brassica rapa TFs

173 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.26675s0176 Boechera stricta Bostr.26675s0176 I 0.821
cassava32957.m1 Manihot esculenta cassava32957.m1 I 0.818
Gorai.005G232300 Gossypium raimondii Gorai.005G232300 I 0.811
Thhalv10010909m.g Eutrema salsugineum Thhalv10010909m.g I 0.800
Bra029985 Brassica rapa Bra029985 I 0.800
Bra012914 Brassica rapa Bra012914 I 0.800
Bo1g081350 Brassica oleracea Bo1g081350 I 0.800
Gorai.010G025200 Gossypium raimondii Gorai.010G025200 I 0.797
cassava43667.valid.m1 Manihot esculenta cassava43667.valid.m1 I 0.797
PGSC0003DMG400011548 Solanum tuberosum PGSC0003DMG400011548 I 0.797
cassava12475.valid.m1 Manihot esculenta cassava12475.valid.m1 I 0.797
28152.m000908 Ricinus communis 28152.m000908 I 0.797
Gorai.002G132600 Gossypium raimondii Gorai.002G132600 I 0.797
fgenesh1_pm.C_scaffold_1003183 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1003183 I 0.793
PGSC0003DMG400041467 Solanum tuberosum PGSC0003DMG400041467 I 0.792
Solyc12g088390.1 Solanum lycopersicum Solyc12g088390.1 I 0.790
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.788
Cagra.9217s0012 Capsella grandiflora Cagra.9217s0012 I 0.788
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.788
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.788
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.788
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.788
Bostr.2128s0015 Boechera stricta Bostr.2128s0015 I 0.788
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.788
Bostr.3148s0159 Boechera stricta Bostr.3148s0159 I 0.788
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.788
TCM_007214 Theobroma cacao TCM_007214 I 0.788
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.788
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.788
PRUPE_ppa011060mg Prunus persica PRUPE_ppa011060mg I 0.788
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.788
Ca_18364 Cicer arietinum Ca_18364 I 0.788
C2H2 Arabidopsis lyrata scaffold_600374.1 I 0.788
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.788
Ca_01586 Cicer arietinum Ca_01586 I 0.788
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.788
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I 0.788
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.788
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I 0.788
Pm021284 Prunus mume Pm021284 I 0.788
Pm005390 Prunus mume Pm005390 I 0.788
Cla001400 Citrullus lanatus Cla001400 I 0.788
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.788
Cucsa.352740 Cucumis sativus Cucsa.352740 I 0.788
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.788
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I 0.788
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.788
Thhalv10014546m.g Eutrema salsugineum Thhalv10014546m.g I 0.788
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I 0.788
Bo5g113850 Brassica oleracea Bo5g113850 I 0.788
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.788
Bo7g065200 Brassica oleracea Bo7g065200 I 0.788
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.788
Bo1g113530 Brassica oleracea Bo1g113530 I 0.788
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.788
chr1.LjT45O14.140.nd Lotus japonicus chr1.LjT45O14.140.nd I 0.788
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.788
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.788
AZF2 Arabidopsis thaliana AT3G19580 D 0.788
chr1.CM0050.50.nc Lotus japonicus chr1.CM0050.50.nc I 0.788
PK10188.1 Cannabis sativa PK10188.1 I 0.788
ZAT6 Arabidopsis thaliana AT5G04340 D 0.788
Carubv10001868m.g Capsella rubella Carubv10001868m.g I 0.788
Bo9g181170 Brassica oleracea Bo9g181170 I 0.788
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.788
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.788
Bra038219 Brassica rapa Bra038219 I 0.788
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.788
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.788
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.788
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.788
TCM_034720 Theobroma cacao TCM_034720 I 0.788
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.788
Bra033666 Brassica rapa Bra033666 I 0.788
MDP0000573176 Malus domestica MDP0000573176 I 0.788
Bra009464 Brassica rapa Bra009464 I 0.788
MDP0000762756 Malus domestica MDP0000762756 I 0.788
Bra022436 Brassica rapa Bra022436 I 0.788
MDP0000319225 Malus domestica MDP0000319225 I 0.788
MDP0000198015 Malus domestica MDP0000198015 I 0.788
Bostr.15697s0099 Boechera stricta Bostr.15697s0099 I 0.786
30170.m013751 Ricinus communis 30170.m013751 I 0.786
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.786
Bo7g048650 Brassica oleracea Bo7g048650 I 0.786
TCM_000780 Theobroma cacao TCM_000780 I 0.786
PGSC0003DMG400034322 Solanum tuberosum PGSC0003DMG400034322 I 0.785
Ciclev10007101m.g Citrus clementina Ciclev10007101m.g I 0.783
30147.m014242 Ricinus communis 30147.m014242 I 0.783
POPTR_0001s00800 Populus trichocarpa POPTR_0001s00800 I 0.783
cassava21316.m1 Manihot esculenta cassava21316.m1 I 0.782
SapurV1A.1944s0060 Salix purpurea SapurV1A.1944s0060 I 0.782
PGSC0003DMG400002383 Solanum tuberosum PGSC0003DMG400002383 I 0.782
SapurV1A.1544s0070 Salix purpurea SapurV1A.1544s0070 I 0.782
STZ Arabidopsis lyrata fgenesh2_kg.1__2932__AT1G27730.1 I 0.781
Bo3g142840 Brassica oleracea Bo3g142840 I 0.781
Bra010922 Brassica rapa Bra010922 I 0.781
mgf006006m Mimulus guttatus mgf006006m I 0.781
AZF3 Arabidopsis thaliana AT5G43170 I 0.781
AZF3 Arabidopsis lyrata scaffold_800768.1 I 0.781
ZAT10 Arabidopsis thaliana AT1G27730 D 0.781
MTR_4g027440 Medicago truncatula MTR_4g027440 I 0.780
Carubv10023569m.g Capsella rubella Carubv10023569m.g I 0.780
AMTR_s00137p00104280 Amborella trichopoda AMTR_s00137p00104280 I 0.780
Cagra.0239s0063 Capsella grandiflora Cagra.0239s0063 I 0.780
GSMUA_Achr2G13410_001 Musa acuminata GSMUA_Achr2G13410_001 I 0.780
OB03G42170 Oryza brachyantha OB03G42170 I 0.778
evm.TU.supercontig_6.32 Carica papaya evm.TU.supercontig_6.32 I 0.776
Bo2g168030 Brassica oleracea Bo2g168030 I 0.776
Bra031834 Brassica rapa Bra031834 I 0.776
Bra037845 Brassica rapa Bra037845 I 0.776
AZF1 Arabidopsis thaliana AT5G67450 D 0.776
Bo9g019120 Brassica oleracea Bo9g019120 I 0.776
Bra000372 Brassica rapa Bra000372 I 0.775
Carubv10017660m.g Capsella rubella Carubv10017660m.g I 0.775
scaffold_503291.1 Arabidopsis lyrata scaffold_503291.1 I 0.775
Bra040325 Brassica rapa Bra040325 I 0.775
fgenesh2_kg.4__2705__AT2G45120.1 Arabidopsis lyrata fgenesh2_kg.4__2705__AT2G45120.1 I 0.775
ZAT4 Arabidopsis thaliana AT2G45120 D 0.775
ZAT9 Arabidopsis thaliana AT3G60580 D 0.775
Bostr.13158s0058 Boechera stricta Bostr.13158s0058 I 0.775
Bostr.25993s0262 Boechera stricta Bostr.25993s0262 I 0.775
Bo4g195370 Brassica oleracea Bo4g195370 I 0.775
Bo3g037560 Brassica oleracea Bo3g037560 I 0.775
Cagra.6011s0004 Capsella grandiflora Cagra.6011s0004 I 0.775
Thhalv10001538m.g Eutrema salsugineum Thhalv10001538m.g I 0.775
GLYMA01G18606 Glycine max GLYMA01G18606 I 0.774
Cucsa.219210 Cucumis sativus Cucsa.219210 I 0.773
Thhalv10005323m.g Eutrema salsugineum Thhalv10005323m.g N 0.771
29661.m000908 Ricinus communis 29661.m000908 I 0.771
Cucsa.395710 Cucumis sativus Cucsa.395710 I 0.770
Cla022966 Citrullus lanatus Cla022966 I 0.770
orange1.1g044606m.g Citrus sinensis orange1.1g044606m.g I 0.769
Gorai.004G164000 Gossypium raimondii Gorai.004G164000 I 0.769
SapurV1A.0248s0230 Salix purpurea SapurV1A.0248s0230 I 0.769
Gorai.001G175400 Gossypium raimondii Gorai.001G175400 I 0.769
Lus10038929.g Linum usitatissimum Lus10038929.g N 0.769
Lus10009278.g Linum usitatissimum Lus10009278.g I 0.769
Ciclev10020499m.g Citrus clementina Ciclev10020499m.g I 0.769
Ca_23672 Cicer arietinum Ca_23672 I 0.769
GLYMA01G32981 Glycine max GLYMA01G32981 I 0.769
GLYMA03G03950 Glycine max GLYMA03G03950 I 0.769
MTR_0160s0030 Medicago truncatula MTR_0160s0030 I 0.769
evm.TU.supercontig_2070.1 Carica papaya evm.TU.supercontig_2070.1 I 0.769
POPTR_0002s14460 Populus trichocarpa POPTR_0002s14460 I 0.769
VIT_15s0021g02720 Vitis vinifera VIT_15s0021g02720 I 0.769
SapurV1A.0033s0440 Salix purpurea SapurV1A.0033s0440 I 0.768
Solyc01g107170.2 Solanum lycopersicum Solyc01g107170.2 I 0.767
MLOC_51405 Hordeum vulgare MLOC_51405 I 0.767
PGSC0003DMG400028275 Solanum tuberosum PGSC0003DMG400028275 I 0.766
GLYMA10G40400 Glycine max GLYMA10G40400 I 0.764
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I 0.764
Ca_05641 Cicer arietinum Ca_05641 I 0.764
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I 0.764
Bo5g052290 Brassica oleracea Bo5g052290 I 0.762
BRADI4G03340 Brachypodium distachyon BRADI4G03340 I 0.762
Bra032845 Brassica rapa Bra032845 I 0.762
PGSC0003DMG400015534 Solanum tuberosum PGSC0003DMG400015534 I 0.761
ZAT11 Arabidopsis thaliana AT2G37430 I 0.761
PGSC0003DMG400015533 Solanum tuberosum PGSC0003DMG400015533 I 0.761
Bra039806 Brassica rapa Bra039806 I 0.761
PGSC0003DMG400015557 Solanum tuberosum PGSC0003DMG400015557 I 0.760
GRMZM2G455889 Zea mays GRMZM2G455889 I 0.760
PGSC0003DMG400015532 Solanum tuberosum PGSC0003DMG400015532 I 0.760
PGSC0003DMG400015531 Solanum tuberosum PGSC0003DMG400015531 I 0.760
Lus10015888.g Linum usitatissimum Lus10015888.g I 0.759
Gorai.010G202400 Gossypium raimondii Gorai.010G202400 I 0.759
Eucgr.B02397 Eucalyptus grandis Eucgr.B02397 I 0.759
MDP0000237150 Malus domestica MDP0000237150 I 0.759
Eucgr.A01232 Eucalyptus grandis Eucgr.A01232 I 0.759
BRADI1G14750 Brachypodium distachyon BRADI1G14750 I 0.758
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I 0.758
VIT_06s0009g02470 Vitis vinifera VIT_06s0009g02470 I 0.757
BRADI4G03410 Brachypodium distachyon BRADI4G03410 I 0.756