Cagra.9217s0012 (Capsella grandiflora)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cagra.9217s0012 T142687_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.822 0.957
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.815 0.891
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.815 0.891
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.815 0.891
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.798 0.848
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.792 0.870
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.792 0.870
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.775 0.717
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.775 0.674
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.9217s0012.1.p C2H2 ZF 91 113
Cagra.9217s0012.1.p C2H2 ZF 146 168

Links

Other C2H2 ZF family TFs
Other Capsella grandiflora TFs

180 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10001868m.g Capsella rubella Carubv10001868m.g I 0.827
Bra033666 Brassica rapa Bra033666 I 0.822
Bra009464 Brassica rapa Bra009464 I 0.822
Bo7g065200 Brassica oleracea Bo7g065200 I 0.822
Thhalv10014546m.g Eutrema salsugineum Thhalv10014546m.g I 0.822
Bo9g181170 Brassica oleracea Bo9g181170 I 0.822
C2H2 Arabidopsis lyrata scaffold_600374.1 I 0.822
ZAT6 Arabidopsis thaliana AT5G04340 D 0.822
Bostr.2128s0015 Boechera stricta Bostr.2128s0015 I 0.822
Bostr.3148s0159 Boechera stricta Bostr.3148s0159 I 0.822
Bostr.15697s0099 Boechera stricta Bostr.15697s0099 I 0.820
Bo7g048650 Brassica oleracea Bo7g048650 I 0.820
AZF3 Arabidopsis thaliana AT5G43170 I 0.816
AZF3 Arabidopsis lyrata scaffold_800768.1 I 0.816
ZAT10 Arabidopsis thaliana AT1G27730 D 0.815
Bo3g142840 Brassica oleracea Bo3g142840 I 0.815
STZ Arabidopsis lyrata fgenesh2_kg.1__2932__AT1G27730.1 I 0.815
Bra010922 Brassica rapa Bra010922 I 0.815
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I 0.803
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I 0.803
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I 0.803
30170.m013751 Ricinus communis 30170.m013751 I 0.802
TCM_000780 Theobroma cacao TCM_000780 I 0.802
PGSC0003DMG400034322 Solanum tuberosum PGSC0003DMG400034322 I 0.800
Gorai.005G232300 Gossypium raimondii Gorai.005G232300 I 0.798
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.798
MDP0000319225 Malus domestica MDP0000319225 I 0.798
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.798
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.798
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.798
MDP0000762756 Malus domestica MDP0000762756 I 0.798
MDP0000573176 Malus domestica MDP0000573176 I 0.798
MDP0000198015 Malus domestica MDP0000198015 I 0.798
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.798
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.798
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.798
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.798
Pm021284 Prunus mume Pm021284 I 0.798
Pm005390 Prunus mume Pm005390 I 0.798
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.798
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.798
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.798
Cucsa.352740 Cucumis sativus Cucsa.352740 I 0.798
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.798
Ca_18364 Cicer arietinum Ca_18364 I 0.798
TCM_007214 Theobroma cacao TCM_007214 I 0.798
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.798
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.798
TCM_034720 Theobroma cacao TCM_034720 I 0.798
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.798
Ca_01586 Cicer arietinum Ca_01586 I 0.798
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.798
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.798
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.798
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.798
Bra022436 Brassica rapa Bra022436 I 0.798
chr1.CM0050.50.nc Lotus japonicus chr1.CM0050.50.nc I 0.798
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.798
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.798
Bra038219 Brassica rapa Bra038219 I 0.798
PK10188.1 Cannabis sativa PK10188.1 I 0.798
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.798
chr1.LjT45O14.140.nd Lotus japonicus chr1.LjT45O14.140.nd I 0.798
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.798
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.798
AZF2 Arabidopsis thaliana AT3G19580 D 0.798
Bo1g113530 Brassica oleracea Bo1g113530 I 0.798
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.798
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.798
Bo5g113850 Brassica oleracea Bo5g113850 I 0.798
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.797
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I 0.797
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.797
Bo5g052290 Brassica oleracea Bo5g052290 I 0.796
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.796
Bra032845 Brassica rapa Bra032845 I 0.796
28152.m000908 Ricinus communis 28152.m000908 I 0.794
cassava43667.valid.m1 Manihot esculenta cassava43667.valid.m1 I 0.794
cassava12475.valid.m1 Manihot esculenta cassava12475.valid.m1 I 0.793
Bra031834 Brassica rapa Bra031834 I 0.792
Bo2g168030 Brassica oleracea Bo2g168030 I 0.792
Bo9g019120 Brassica oleracea Bo9g019120 I 0.792
Bra037845 Brassica rapa Bra037845 I 0.792
AZF1 Arabidopsis thaliana AT5G67450 D 0.792
AMTR_s00137p00104280 Amborella trichopoda AMTR_s00137p00104280 I 0.790
Bra018817 Brassica rapa Bra018817 I 0.788
Bostr.26675s0176 Boechera stricta Bostr.26675s0176 I 0.788
Gorai.002G132600 Gossypium raimondii Gorai.002G132600 I 0.788
PGSC0003DMG400011548 Solanum tuberosum PGSC0003DMG400011548 I 0.788
Gorai.010G025200 Gossypium raimondii Gorai.010G025200 I 0.788
PRUPE_ppa011060mg Prunus persica PRUPE_ppa011060mg I 0.788
Thhalv10010909m.g Eutrema salsugineum Thhalv10010909m.g I 0.787
Bo1g081350 Brassica oleracea Bo1g081350 I 0.787
Bra029985 Brassica rapa Bra029985 I 0.787
Bra012914 Brassica rapa Bra012914 I 0.787
evm.TU.supercontig_6.32 Carica papaya evm.TU.supercontig_6.32 I 0.787
Cucsa.395710 Cucumis sativus Cucsa.395710 I 0.785
Cla022966 Citrullus lanatus Cla022966 I 0.785
cassava32957.m1 Manihot esculenta cassava32957.m1 I 0.784
PGSC0003DMG400041467 Solanum tuberosum PGSC0003DMG400041467 I 0.783
PGSC0003DMG400002383 Solanum tuberosum PGSC0003DMG400002383 I 0.783
Solyc01g107170.2 Solanum lycopersicum Solyc01g107170.2 I 0.782
Solyc12g088390.1 Solanum lycopersicum Solyc12g088390.1 I 0.782
mgf006006m Mimulus guttatus mgf006006m I 0.782
Ca_05641 Cicer arietinum Ca_05641 I 0.779
GLYMA10G40400 Glycine max GLYMA10G40400 I 0.779
OB03G42170 Oryza brachyantha OB03G42170 I 0.779
BRADI4G03340 Brachypodium distachyon BRADI4G03340 I 0.777
Bra040325 Brassica rapa Bra040325 I 0.775
scaffold_503291.1 Arabidopsis lyrata scaffold_503291.1 I 0.775
Cagra.0239s0063 Capsella grandiflora Cagra.0239s0063 I 0.775
Bostr.13158s0058 Boechera stricta Bostr.13158s0058 I 0.775
fgenesh2_kg.4__2705__AT2G45120.1 Arabidopsis lyrata fgenesh2_kg.4__2705__AT2G45120.1 I 0.775
ZAT4 Arabidopsis thaliana AT2G45120 D 0.775
Carubv10023569m.g Capsella rubella Carubv10023569m.g I 0.775
ZAT9 Arabidopsis thaliana AT3G60580 D 0.775
Bostr.25993s0262 Boechera stricta Bostr.25993s0262 I 0.775
Thhalv10001538m.g Eutrema salsugineum Thhalv10001538m.g I 0.775
Bra000372 Brassica rapa Bra000372 I 0.775
Bo4g195370 Brassica oleracea Bo4g195370 I 0.775
MTR_4g027440 Medicago truncatula MTR_4g027440 I 0.775
Carubv10017660m.g Capsella rubella Carubv10017660m.g I 0.775
Bo3g037560 Brassica oleracea Bo3g037560 I 0.775
Cagra.6011s0004 Capsella grandiflora Cagra.6011s0004 I 0.775
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I 0.774
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I 0.774
GSMUA_Achr2G13410_001 Musa acuminata GSMUA_Achr2G13410_001 I 0.771
Pavir.Ba01050 Panicum virgatum Pavir.Ba01050 I 0.770
Gorai.004G164000 Gossypium raimondii Gorai.004G164000 I 0.770
Pavir.J15191 Panicum virgatum Pavir.J15191 I 0.770
Si032711m.g Setaria italica Si032711m.g I 0.770
Sb02g038070 Sorghum bicolor Sb02g038070 I 0.770
AC185108.3_FG011 Zea mays AC185108.3_FG011 I 0.770
Gorai.001G175400 Gossypium raimondii Gorai.001G175400 I 0.769
orange1.1g044606m.g Citrus sinensis orange1.1g044606m.g I 0.769
POPTR_0002s14460 Populus trichocarpa POPTR_0002s14460 I 0.769
Lus10009278.g Linum usitatissimum Lus10009278.g I 0.769
MTR_0160s0030 Medicago truncatula MTR_0160s0030 I 0.769
SapurV1A.0248s0230 Salix purpurea SapurV1A.0248s0230 I 0.769
GLYMA03G03950 Glycine max GLYMA03G03950 I 0.769
evm.TU.supercontig_2070.1 Carica papaya evm.TU.supercontig_2070.1 I 0.769
Ca_23672 Cicer arietinum Ca_23672 I 0.769
GLYMA01G18606 Glycine max GLYMA01G18606 I 0.769
Ciclev10020499m.g Citrus clementina Ciclev10020499m.g I 0.769
GLYMA01G32981 Glycine max GLYMA01G32981 I 0.769
VIT_15s0021g02720 Vitis vinifera VIT_15s0021g02720 I 0.769
SapurV1A.0033s0440 Salix purpurea SapurV1A.0033s0440 I 0.768
BRADI1G14750 Brachypodium distachyon BRADI1G14750 I 0.768
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I 0.768
PGSC0003DMG400028275 Solanum tuberosum PGSC0003DMG400028275 I 0.767
Cucsa.219210 Cucumis sativus Cucsa.219210 I 0.765
Cla001400 Citrullus lanatus Cla001400 I 0.764
OBART03G22570 Oryza barthii OBART03G22570 I 0.763
OB03G31780 Oryza brachyantha OB03G31780 I 0.763
LPERR03G19200 Leersia perrieri LPERR03G19200 I 0.763
BGIOSGA010468 Oryza indica BGIOSGA010468 I 0.763
OGLUM03G23350 Oryza glumaepatula OGLUM03G23350 I 0.763
MLOC_54674 Hordeum vulgare MLOC_54674 I 0.763
ORUFI03G23240 Oryza rufipogon ORUFI03G23240 I 0.763
Si023013m.g Setaria italica Si023013m.g I 0.763
OLONG_027628 Oryza longistaminata OLONG_027628 I 0.763
OS03G0437200 Oryza sativa OS03G0437200 I 0.763
OS12G0583700 Oryza sativa OS12G0583700 I 0.763
ORGLA03G0210300 Oryza glaberrima ORGLA03G0210300 I 0.763
OPUNC12G15600 Oryza punctata OPUNC12G15600 I 0.763
29661.m000908 Ricinus communis 29661.m000908 I 0.761
30147.m014242 Ricinus communis 30147.m014242 I 0.760
Ciclev10007101m.g Citrus clementina Ciclev10007101m.g I 0.760
POPTR_0001s00800 Populus trichocarpa POPTR_0001s00800 I 0.760
cassava21316.m1 Manihot esculenta cassava21316.m1 I 0.759
SapurV1A.1544s0070 Salix purpurea SapurV1A.1544s0070 I 0.759
Lus10015888.g Linum usitatissimum Lus10015888.g I 0.759
SapurV1A.1944s0060 Salix purpurea SapurV1A.1944s0060 I 0.759
fgenesh1_pm.C_scaffold_1003183 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1003183 I 0.758
BRADI1G16010 Brachypodium distachyon BRADI1G16010 I 0.758
LPERR03G21480 Leersia perrieri LPERR03G21480 I 0.758
GSMUA_Achr5G08730_001 Musa acuminata GSMUA_Achr5G08730_001 I 0.758
MLOC_51405 Hordeum vulgare MLOC_51405 I 0.758
PGSC0003DMG400024550 Solanum tuberosum PGSC0003DMG400024550 I 0.757
Solyc03g115450.1 Solanum lycopersicum Solyc03g115450.1 I 0.757