Thhalv10010909m.g (Eutrema salsugineum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Thhalv10010909m.g T143551_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.798 0.913
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.798 0.913
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.792 0.826
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.788 0.848
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.788 0.848
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.788 0.848
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.787 0.826
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.766 0.717
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.766 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10010909m C2H2 ZF 89 111
Thhalv10010909m C2H2 ZF 151 173

Links

Other C2H2 ZF family TFs
Other Eutrema salsugineum TFs

173 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra029985 Brassica rapa Bra029985 I 0.827
Bra012914 Brassica rapa Bra012914 I 0.827
Bo1g081350 Brassica oleracea Bo1g081350 I 0.827
Gorai.005G232300 Gossypium raimondii Gorai.005G232300 I 0.816
Bostr.26675s0176 Boechera stricta Bostr.26675s0176 I 0.805
cassava32957.m1 Manihot esculenta cassava32957.m1 I 0.800
Bra018817 Brassica rapa Bra018817 I 0.800
Bo2g168030 Brassica oleracea Bo2g168030 I 0.798
Bo9g019120 Brassica oleracea Bo9g019120 I 0.798
Bra031834 Brassica rapa Bra031834 I 0.798
AZF1 Arabidopsis thaliana AT5G67450 D 0.798
Bra037845 Brassica rapa Bra037845 I 0.798
evm.TU.supercontig_6.32 Carica papaya evm.TU.supercontig_6.32 I 0.798
Bo7g048650 Brassica oleracea Bo7g048650 I 0.793
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.793
Bostr.15697s0099 Boechera stricta Bostr.15697s0099 I 0.793
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.792
OB03G42170 Oryza brachyantha OB03G42170 I 0.792
PK10188.1 Cannabis sativa PK10188.1 I 0.792
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.792
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.792
Bostr.2128s0015 Boechera stricta Bostr.2128s0015 I 0.792
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.792
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.792
chr1.LjT45O14.140.nd Lotus japonicus chr1.LjT45O14.140.nd I 0.792
chr1.CM0050.50.nc Lotus japonicus chr1.CM0050.50.nc I 0.792
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.792
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.792
Thhalv10014546m.g Eutrema salsugineum Thhalv10014546m.g I 0.792
Cucsa.352740 Cucumis sativus Cucsa.352740 I 0.792
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.792
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.792
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.792
TCM_034720 Theobroma cacao TCM_034720 I 0.792
C2H2 Arabidopsis lyrata scaffold_600374.1 I 0.792
MDP0000573176 Malus domestica MDP0000573176 I 0.792
TCM_007214 Theobroma cacao TCM_007214 I 0.792
MDP0000319225 Malus domestica MDP0000319225 I 0.792
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.792
MDP0000762756 Malus domestica MDP0000762756 I 0.792
Pm021284 Prunus mume Pm021284 I 0.792
Pm005390 Prunus mume Pm005390 I 0.792
MDP0000198015 Malus domestica MDP0000198015 I 0.792
Ca_01586 Cicer arietinum Ca_01586 I 0.792
Ca_18364 Cicer arietinum Ca_18364 I 0.792
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.792
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.792
Bo1g113530 Brassica oleracea Bo1g113530 I 0.792
Bra038219 Brassica rapa Bra038219 I 0.792
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.792
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.792
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.792
Bra022436 Brassica rapa Bra022436 I 0.792
Bra009464 Brassica rapa Bra009464 I 0.792
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.792
Bo9g181170 Brassica oleracea Bo9g181170 I 0.792
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.792
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.792
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.792
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.792
Bo5g113850 Brassica oleracea Bo5g113850 I 0.792
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.792
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.792
Bostr.3148s0159 Boechera stricta Bostr.3148s0159 I 0.792
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.792
ZAT6 Arabidopsis thaliana AT5G04340 D 0.792
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.792
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.792
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.791
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.791
ZAT10 Arabidopsis thaliana AT1G27730 D 0.788
Bo3g142840 Brassica oleracea Bo3g142840 I 0.788
30170.m013751 Ricinus communis 30170.m013751 I 0.788
GSMUA_Achr2G13410_001 Musa acuminata GSMUA_Achr2G13410_001 I 0.788
STZ Arabidopsis lyrata fgenesh2_kg.1__2932__AT1G27730.1 I 0.788
TCM_000780 Theobroma cacao TCM_000780 I 0.788
Bra010922 Brassica rapa Bra010922 I 0.788
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I 0.787
AZF2 Arabidopsis thaliana AT3G19580 D 0.787
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I 0.787
Carubv10001868m.g Capsella rubella Carubv10001868m.g I 0.787
Bra033666 Brassica rapa Bra033666 I 0.787
Bo7g065200 Brassica oleracea Bo7g065200 I 0.787
Cagra.9217s0012 Capsella grandiflora Cagra.9217s0012 I 0.787
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I 0.787
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I 0.786
Gorai.002G132600 Gossypium raimondii Gorai.002G132600 I 0.782
PGSC0003DMG400011548 Solanum tuberosum PGSC0003DMG400011548 I 0.782
AMTR_s00137p00104280 Amborella trichopoda AMTR_s00137p00104280 I 0.782
PRUPE_ppa011060mg Prunus persica PRUPE_ppa011060mg I 0.782
Gorai.010G025200 Gossypium raimondii Gorai.010G025200 I 0.782
Cla001400 Citrullus lanatus Cla001400 I 0.780
AZF3 Arabidopsis thaliana AT5G43170 I 0.780
AZF3 Arabidopsis lyrata scaffold_800768.1 I 0.780
Solyc12g088390.1 Solanum lycopersicum Solyc12g088390.1 I 0.779
mgf006006m Mimulus guttatus mgf006006m I 0.779
Thhalv10005323m.g Eutrema salsugineum Thhalv10005323m.g N 0.777
28152.m000908 Ricinus communis 28152.m000908 I 0.777
PGSC0003DMG400002383 Solanum tuberosum PGSC0003DMG400002383 I 0.777
cassava43667.valid.m1 Manihot esculenta cassava43667.valid.m1 I 0.777
PGSC0003DMG400041467 Solanum tuberosum PGSC0003DMG400041467 I 0.777
cassava12475.valid.m1 Manihot esculenta cassava12475.valid.m1 I 0.776
fgenesh1_pm.C_scaffold_1003183 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1003183 I 0.776
30147.m014242 Ricinus communis 30147.m014242 I 0.775
Ciclev10007101m.g Citrus clementina Ciclev10007101m.g I 0.775
POPTR_0001s00800 Populus trichocarpa POPTR_0001s00800 I 0.775
SapurV1A.1544s0070 Salix purpurea SapurV1A.1544s0070 I 0.774
cassava21316.m1 Manihot esculenta cassava21316.m1 I 0.774
SapurV1A.1944s0060 Salix purpurea SapurV1A.1944s0060 I 0.774
GSMUA_Achr5G08730_001 Musa acuminata GSMUA_Achr5G08730_001 I 0.772
LPERR03G21480 Leersia perrieri LPERR03G21480 I 0.772
PGSC0003DMG400034322 Solanum tuberosum PGSC0003DMG400034322 I 0.770
Cla022966 Citrullus lanatus Cla022966 I 0.770
Cucsa.395710 Cucumis sativus Cucsa.395710 I 0.770
Bra032845 Brassica rapa Bra032845 I 0.769
Bo5g052290 Brassica oleracea Bo5g052290 I 0.769
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I 0.768
GRMZM2G455889 Zea mays GRMZM2G455889 I 0.767
PGSC0003DMG400045547 Solanum tuberosum PGSC0003DMG400045547 I 0.767
Bra000372 Brassica rapa Bra000372 I 0.766
Bostr.13158s0058 Boechera stricta Bostr.13158s0058 I 0.766
Carubv10017660m.g Capsella rubella Carubv10017660m.g I 0.766
Bo4g195370 Brassica oleracea Bo4g195370 I 0.766
Bo3g037560 Brassica oleracea Bo3g037560 I 0.766
scaffold_503291.1 Arabidopsis lyrata scaffold_503291.1 I 0.766
ZAT4 Arabidopsis thaliana AT2G45120 D 0.766
ZAT9 Arabidopsis thaliana AT3G60580 D 0.766
Thhalv10001538m.g Eutrema salsugineum Thhalv10001538m.g I 0.766
Carubv10023569m.g Capsella rubella Carubv10023569m.g I 0.766
Cagra.6011s0004 Capsella grandiflora Cagra.6011s0004 I 0.766
Bra040325 Brassica rapa Bra040325 I 0.766
fgenesh2_kg.4__2705__AT2G45120.1 Arabidopsis lyrata fgenesh2_kg.4__2705__AT2G45120.1 I 0.766
Bostr.25993s0262 Boechera stricta Bostr.25993s0262 I 0.766
Cagra.0239s0063 Capsella grandiflora Cagra.0239s0063 I 0.766
MTR_4g027440 Medicago truncatula MTR_4g027440 I 0.766
VIT_06s0009g02470 Vitis vinifera VIT_06s0009g02470 I 0.765
GLYMA10G40400 Glycine max GLYMA10G40400 I 0.763
Ca_05641 Cicer arietinum Ca_05641 I 0.763
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I 0.763
BRADI1G14750 Brachypodium distachyon BRADI1G14750 I 0.762
Lus10038929.g Linum usitatissimum Lus10038929.g N 0.762
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I 0.762
Gorai.004G164000 Gossypium raimondii Gorai.004G164000 I 0.761
PGSC0003DMG400028275 Solanum tuberosum PGSC0003DMG400028275 I 0.761
orange1.1g044606m.g Citrus sinensis orange1.1g044606m.g I 0.760
Lus10009278.g Linum usitatissimum Lus10009278.g I 0.760
POPTR_0002s14460 Populus trichocarpa POPTR_0002s14460 I 0.760
MTR_0160s0030 Medicago truncatula MTR_0160s0030 I 0.760
GLYMA03G03950 Glycine max GLYMA03G03950 I 0.760
GLYMA01G32981 Glycine max GLYMA01G32981 I 0.760
GLYMA01G18606 Glycine max GLYMA01G18606 I 0.760
SapurV1A.0248s0230 Salix purpurea SapurV1A.0248s0230 I 0.760
SapurV1A.0033s0440 Salix purpurea SapurV1A.0033s0440 I 0.760
evm.TU.supercontig_2070.1 Carica papaya evm.TU.supercontig_2070.1 I 0.760
Ciclev10020499m.g Citrus clementina Ciclev10020499m.g I 0.760
Ca_23672 Cicer arietinum Ca_23672 I 0.760
VIT_15s0021g02720 Vitis vinifera VIT_15s0021g02720 I 0.760
Gorai.001G175400 Gossypium raimondii Gorai.001G175400 I 0.760
Si023013m.g Setaria italica Si023013m.g I 0.757
OB03G31780 Oryza brachyantha OB03G31780 I 0.757
OBART03G22570 Oryza barthii OBART03G22570 I 0.757
MLOC_54674 Hordeum vulgare MLOC_54674 I 0.757
LPERR03G19200 Leersia perrieri LPERR03G19200 I 0.757
BGIOSGA010468 Oryza indica BGIOSGA010468 I 0.757
BRADI1G16010 Brachypodium distachyon BRADI1G16010 I 0.757
OGLUM03G23350 Oryza glumaepatula OGLUM03G23350 I 0.757
OLONG_027628 Oryza longistaminata OLONG_027628 I 0.757
OS03G0437200 Oryza sativa OS03G0437200 I 0.757
OS12G0583700 Oryza sativa OS12G0583700 I 0.757
ORUFI03G23240 Oryza rufipogon ORUFI03G23240 I 0.757
ORGLA03G0210300 Oryza glaberrima ORGLA03G0210300 I 0.757
OPUNC12G15600 Oryza punctata OPUNC12G15600 I 0.757
AC211702.2_FG002 Zea mays AC211702.2_FG002 I 0.756