fgenesh1_pm.C_scaffold_1003183 (Arabidopsis lyrata)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 fgenesh1_pm.C_scaffold_1003183 T117342_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.775 0.717
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.770 0.674
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.770 0.674
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.764 0.783
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.762 0.717
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.762 0.717
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.762 0.717
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.758 0.761
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.C_scaffold_1003183 C2H2 ZF 182 204
fgenesh1_pm.C_scaffold_1003183 C2H2 ZF 236 258

Links

Other C2H2 ZF family TFs
Other Arabidopsis lyrata TFs

169 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.26675s0176 Boechera stricta Bostr.26675s0176 I 0.797
Bra018817 Brassica rapa Bra018817 I 0.793
cassava32957.m1 Manihot esculenta cassava32957.m1 I 0.789
29661.m000908 Ricinus communis 29661.m000908 I 0.789
Gorai.005G232300 Gossypium raimondii Gorai.005G232300 I 0.788
PGSC0003DMG400015534 Solanum tuberosum PGSC0003DMG400015534 I 0.780
ZAT11 Arabidopsis thaliana AT2G37430 I 0.780
PGSC0003DMG400015533 Solanum tuberosum PGSC0003DMG400015533 I 0.780
PGSC0003DMG400015532 Solanum tuberosum PGSC0003DMG400015532 I 0.779
Bra039806 Brassica rapa Bra039806 I 0.779
PGSC0003DMG400015531 Solanum tuberosum PGSC0003DMG400015531 I 0.779
PGSC0003DMG400015557 Solanum tuberosum PGSC0003DMG400015557 I 0.779
MDP0000237150 Malus domestica MDP0000237150 I 0.778
Bra012914 Brassica rapa Bra012914 I 0.776
Thhalv10010909m.g Eutrema salsugineum Thhalv10010909m.g I 0.776
Bra029985 Brassica rapa Bra029985 I 0.776
Bo1g081350 Brassica oleracea Bo1g081350 I 0.776
PGSC0003DMG400024550 Solanum tuberosum PGSC0003DMG400024550 I 0.775
Cagra.2350s0072 Capsella grandiflora Cagra.2350s0072 I 0.775
Bostr.5325s0123 Boechera stricta Bostr.5325s0123 I 0.775
ZAT1 Arabidopsis thaliana AT1G02030 D 0.775
Solyc03g115450.1 Solanum lycopersicum Solyc03g115450.1 I 0.775
Bra030981 Brassica rapa Bra030981 I 0.773
PGSC0003DMG400011548 Solanum tuberosum PGSC0003DMG400011548 I 0.773
Gorai.010G025200 Gossypium raimondii Gorai.010G025200 I 0.773
Gorai.002G132600 Gossypium raimondii Gorai.002G132600 I 0.773
PGSC0003DMG400041467 Solanum tuberosum PGSC0003DMG400041467 I 0.773
Solyc12g088390.1 Solanum lycopersicum Solyc12g088390.1 I 0.772
GSMUA_Achr5G08730_001 Musa acuminata GSMUA_Achr5G08730_001 I 0.772
Cagra.0612s0086 Capsella grandiflora Cagra.0612s0086 I 0.770
Bo00576s170 Brassica oleracea Bo00576s170 I 0.770
fgenesh2_kg.5__1736__AT3G53600.1 Arabidopsis lyrata fgenesh2_kg.5__1736__AT3G53600.1 I 0.770
Bra003148 Brassica rapa Bra003148 I 0.770
AT3G53600 Arabidopsis thaliana AT3G53600 D 0.770
Bostr.11793s0034 Boechera stricta Bostr.11793s0034 I 0.770
Carubv10018114m.g Capsella rubella Carubv10018114m.g I 0.770
scaffold_700593.1 Arabidopsis lyrata scaffold_700593.1 I 0.769
Si010615m.g Setaria italica Si010615m.g I 0.769
GRMZM2G170520 Zea mays GRMZM2G170520 I 0.769
Bostr.7867s1389 Boechera stricta Bostr.7867s1389 I 0.769
Bra017706 Brassica rapa Bra017706 I 0.769
ZAT3 Arabidopsis thaliana AT4G35280 I 0.769
28152.m000908 Ricinus communis 28152.m000908 I 0.768
cassava12475.valid.m1 Manihot esculenta cassava12475.valid.m1 I 0.768
cassava43667.valid.m1 Manihot esculenta cassava43667.valid.m1 I 0.768
Cucsa.219210 Cucumis sativus Cucsa.219210 I 0.768
MLOC_51405 Hordeum vulgare MLOC_51405 I 0.767
BRADI4G03340 Brachypodium distachyon BRADI4G03340 I 0.767
Solyc01g107170.2 Solanum lycopersicum Solyc01g107170.2 I 0.767
MDP0000762756 Malus domestica MDP0000762756 I 0.764
C2H2 Arabidopsis lyrata scaffold_600374.1 I 0.764
MDP0000573176 Malus domestica MDP0000573176 I 0.764
MDP0000319225 Malus domestica MDP0000319225 I 0.764
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.764
TCM_034720 Theobroma cacao TCM_034720 I 0.764
TCM_007214 Theobroma cacao TCM_007214 I 0.764
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.764
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.764
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.764
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.764
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.764
Pm021284 Prunus mume Pm021284 I 0.764
ZAT6 Arabidopsis thaliana AT5G04340 D 0.764
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.764
Bostr.3148s0159 Boechera stricta Bostr.3148s0159 I 0.764
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.764
Cucsa.352740 Cucumis sativus Cucsa.352740 I 0.764
Bostr.2128s0015 Boechera stricta Bostr.2128s0015 I 0.764
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.764
Lus10038929.g Linum usitatissimum Lus10038929.g N 0.764
Ca_18364 Cicer arietinum Ca_18364 I 0.764
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.764
Pm005390 Prunus mume Pm005390 I 0.764
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.764
Bo1g113530 Brassica oleracea Bo1g113530 I 0.764
MDP0000198015 Malus domestica MDP0000198015 I 0.764
Ca_01586 Cicer arietinum Ca_01586 I 0.764
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.764
Thhalv10014546m.g Eutrema salsugineum Thhalv10014546m.g I 0.764
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.764
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.764
Thhalv10010956m.g Eutrema salsugineum Thhalv10010956m.g I 0.764
PRUPE_ppa011060mg Prunus persica PRUPE_ppa011060mg I 0.764
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.764
Bra022436 Brassica rapa Bra022436 I 0.764
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.764
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.764
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.764
chr1.LjT45O14.140.nd Lotus japonicus chr1.LjT45O14.140.nd I 0.764
Bra038219 Brassica rapa Bra038219 I 0.764
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.764
chr1.CM0050.50.nc Lotus japonicus chr1.CM0050.50.nc I 0.764
PK10188.1 Cannabis sativa PK10188.1 I 0.764
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.764
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.764
Bo9g181170 Brassica oleracea Bo9g181170 I 0.764
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.764
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.764
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.764
Bo5g113850 Brassica oleracea Bo5g113850 I 0.764
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.764
Bra009464 Brassica rapa Bra009464 I 0.764
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.764
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.764
Bo6g067580 Brassica oleracea Bo6g067580 I 0.764
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.764
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I 0.764
PGSC0003DMG400002383 Solanum tuberosum PGSC0003DMG400002383 I 0.764
Bo7g117320 Brassica oleracea Bo7g117320 I 0.763
BGIOSGA026045 Oryza indica BGIOSGA026045 N 0.763
OS07G0588600 Oryza sativa OS07G0588600 N 0.763
ORUFI07G21440 Oryza rufipogon ORUFI07G21440 N 0.763
ONIVA07G18980 Oryza nivara ONIVA07G18980 N 0.763
Bra010922 Brassica rapa Bra010922 I 0.762
Bo3g142840 Brassica oleracea Bo3g142840 I 0.762
Bra032845 Brassica rapa Bra032845 I 0.762
Bostr.15697s0099 Boechera stricta Bostr.15697s0099 I 0.762
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.762
Bo5g052290 Brassica oleracea Bo5g052290 I 0.762
Bo7g048650 Brassica oleracea Bo7g048650 I 0.762
mgf006006m Mimulus guttatus mgf006006m I 0.762
STZ Arabidopsis lyrata fgenesh2_kg.1__2932__AT1G27730.1 I 0.762
ZAT10 Arabidopsis thaliana AT1G27730 D 0.762
PGSC0003DMG400034322 Solanum tuberosum PGSC0003DMG400034322 I 0.761
Thhalv10009894m.g Eutrema salsugineum Thhalv10009894m.g I 0.761
30147.m014242 Ricinus communis 30147.m014242 I 0.759
Ciclev10007101m.g Citrus clementina Ciclev10007101m.g I 0.759
POPTR_0001s00800 Populus trichocarpa POPTR_0001s00800 I 0.759
Cla001400 Citrullus lanatus Cla001400 I 0.759
Thhalv10025912m.g Eutrema salsugineum Thhalv10025912m.g I 0.759
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I 0.758
SapurV1A.1944s0060 Salix purpurea SapurV1A.1944s0060 I 0.758
SapurV1A.1544s0070 Salix purpurea SapurV1A.1544s0070 I 0.758
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I 0.758
AZF2 Arabidopsis thaliana AT3G19580 D 0.758
Ca_05641 Cicer arietinum Ca_05641 I 0.758
MLOC_54674 Hordeum vulgare MLOC_54674 I 0.758
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I 0.758
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I 0.758
OPUNC12G15600 Oryza punctata OPUNC12G15600 I 0.758
Si023013m.g Setaria italica Si023013m.g I 0.758
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I 0.758
OS12G0583700 Oryza sativa OS12G0583700 I 0.758
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I 0.758
GLYMA10G40400 Glycine max GLYMA10G40400 I 0.758
Cagra.9217s0012 Capsella grandiflora Cagra.9217s0012 I 0.758
Carubv10001868m.g Capsella rubella Carubv10001868m.g I 0.758
Bra033666 Brassica rapa Bra033666 I 0.758
Bo7g065200 Brassica oleracea Bo7g065200 I 0.758
BRADI1G14750 Brachypodium distachyon BRADI1G14750 I 0.758
cassava21316.m1 Manihot esculenta cassava21316.m1 I 0.758
BRADI1G22940 Brachypodium distachyon BRADI1G22940 N 0.757
GRMZM2G089557 Zea mays GRMZM2G089557 N 0.757
Pavir.J16973 Panicum virgatum Pavir.J16973 N 0.757
Traes_2BS_DD07C2EE6 Triticum aestivum Traes_2BS_DD07C2EE6 N 0.757
Sb02g038000 Sorghum bicolor Sb02g038000 N 0.757
30170.m013751 Ricinus communis 30170.m013751 I 0.757
TCM_000780 Theobroma cacao TCM_000780 I 0.757
Pavir.J15304 Panicum virgatum Pavir.J15304 N 0.757
cassava35212.m1 Manihot esculenta cassava35212.m1 I 0.756
Bra017188 Brassica rapa Bra017188 I 0.756
Cagra.0666s0001 Capsella grandiflora Cagra.0666s0001 I 0.756
Carubv10024141m.g Capsella rubella Carubv10024141m.g I 0.756
Bra005197 Brassica rapa Bra005197 I 0.756
Bo4g030570 Brassica oleracea Bo4g030570 I 0.756
Bo4g186920 Brassica oleracea Bo4g186920 I 0.756
GSMUA_Achr2G13410_001 Musa acuminata GSMUA_Achr2G13410_001 I 0.756
28637.m000203 Ricinus communis 28637.m000203 I 0.756
BRADI4G03410 Brachypodium distachyon BRADI4G03410 I 0.756