Bo5g052290 (Brassica oleracea)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bo5g052290 T081750_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.802 0.913
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.798 0.913
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.798 0.913
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.798 0.913
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.772 0.826
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.764 0.848
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.764 0.848
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo5g052290.1 C2H2 ZF 88 110
Bo5g052290.1 C2H2 ZF 141 164

Links

Other C2H2 ZF family TFs
Other Brassica oleracea TFs

144 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra032845 Brassica rapa Bra032845 I 0.827
Bostr.15697s0099 Boechera stricta Bostr.15697s0099 I 0.803
Bo7g048650 Brassica oleracea Bo7g048650 I 0.803
Bostr.3148s0159 Boechera stricta Bostr.3148s0159 I 0.802
Bo9g181170 Brassica oleracea Bo9g181170 I 0.802
Thhalv10014546m.g Eutrema salsugineum Thhalv10014546m.g I 0.802
C2H2 Arabidopsis lyrata scaffold_600374.1 I 0.802
Bostr.2128s0015 Boechera stricta Bostr.2128s0015 I 0.802
Bra009464 Brassica rapa Bra009464 I 0.802
ZAT6 Arabidopsis thaliana AT5G04340 D 0.802
STZ Arabidopsis lyrata fgenesh2_kg.1__2932__AT1G27730.1 I 0.798
ZAT10 Arabidopsis thaliana AT1G27730 D 0.798
Bra010922 Brassica rapa Bra010922 I 0.798
Bo3g142840 Brassica oleracea Bo3g142840 I 0.798
Carubv10001868m.g Capsella rubella Carubv10001868m.g I 0.796
Cagra.9217s0012 Capsella grandiflora Cagra.9217s0012 I 0.796
Bo7g065200 Brassica oleracea Bo7g065200 I 0.796
Bra033666 Brassica rapa Bra033666 I 0.796
BRADI1G14750 Brachypodium distachyon BRADI1G14750 I 0.795
AZF3 Arabidopsis thaliana AT5G43170 I 0.790
AZF3 Arabidopsis lyrata scaffold_800768.1 I 0.790
Solyc01g107170.2 Solanum lycopersicum Solyc01g107170.2 I 0.786
BRADI4G03340 Brachypodium distachyon BRADI4G03340 I 0.781
PGSC0003DMG400034322 Solanum tuberosum PGSC0003DMG400034322 I 0.780
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.779
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.778
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.778
TCM_034720 Theobroma cacao TCM_034720 I 0.778
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.778
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.778
MDP0000762756 Malus domestica MDP0000762756 I 0.778
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.778
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.778
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.778
Gorai.005G232300 Gossypium raimondii Gorai.005G232300 I 0.778
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.778
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.778
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I 0.778
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.778
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.778
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.778
MDP0000319225 Malus domestica MDP0000319225 I 0.778
MDP0000198015 Malus domestica MDP0000198015 I 0.778
TCM_007214 Theobroma cacao TCM_007214 I 0.778
MDP0000573176 Malus domestica MDP0000573176 I 0.778
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.778
Bo5g113850 Brassica oleracea Bo5g113850 I 0.778
chr1.CM0050.50.nc Lotus japonicus chr1.CM0050.50.nc I 0.778
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.778
PK10188.1 Cannabis sativa PK10188.1 I 0.778
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.778
Bo1g113530 Brassica oleracea Bo1g113530 I 0.778
Cucsa.352740 Cucumis sativus Cucsa.352740 I 0.778
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.778
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.778
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.778
chr1.LjT45O14.140.nd Lotus japonicus chr1.LjT45O14.140.nd I 0.778
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.778
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.778
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.778
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.778
Ca_18364 Cicer arietinum Ca_18364 I 0.778
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.778
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.778
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.778
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.778
Bra022436 Brassica rapa Bra022436 I 0.778
Pm021284 Prunus mume Pm021284 I 0.778
Pm005390 Prunus mume Pm005390 I 0.778
Bra038219 Brassica rapa Bra038219 I 0.778
Ca_01586 Cicer arietinum Ca_01586 I 0.778
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.777
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.777
Bra007545 Brassica rapa Bra007545 I 0.776
Thhalv10006508m.g Eutrema salsugineum Thhalv10006508m.g I 0.776
Bra014483 Brassica rapa Bra014483 I 0.776
Bra003422 Brassica rapa Bra003422 I 0.776
Bo4g104940 Brassica oleracea Bo4g104940 I 0.776
Bo8g095300 Brassica oleracea Bo8g095300 I 0.776
Bo6g077190 Brassica oleracea Bo6g077190 I 0.776
TCM_000780 Theobroma cacao TCM_000780 I 0.774
30170.m013751 Ricinus communis 30170.m013751 I 0.774
GLYMA10G40400 Glycine max GLYMA10G40400 I 0.772
Ca_05641 Cicer arietinum Ca_05641 I 0.772
AZF2 Arabidopsis thaliana AT3G19580 D 0.772
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I 0.772
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I 0.772
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I 0.772
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I 0.772
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I 0.772
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I 0.772
AC185108.3_FG011 Zea mays AC185108.3_FG011 I 0.769
Si032711m.g Setaria italica Si032711m.g I 0.769
Bo1g081350 Brassica oleracea Bo1g081350 I 0.769
Bra012914 Brassica rapa Bra012914 I 0.769
Thhalv10010909m.g Eutrema salsugineum Thhalv10010909m.g I 0.769
Pavir.J15191 Panicum virgatum Pavir.J15191 I 0.769
Bra029985 Brassica rapa Bra029985 I 0.769
Sb02g038070 Sorghum bicolor Sb02g038070 I 0.769
Pavir.Ba01050 Panicum virgatum Pavir.Ba01050 I 0.769
Gorai.002G132600 Gossypium raimondii Gorai.002G132600 I 0.768
Gorai.010G025200 Gossypium raimondii Gorai.010G025200 I 0.768
PRUPE_ppa011060mg Prunus persica PRUPE_ppa011060mg I 0.768
PGSC0003DMG400011548 Solanum tuberosum PGSC0003DMG400011548 I 0.768
AMTR_s00137p00104280 Amborella trichopoda AMTR_s00137p00104280 I 0.768
Bostr.26675s0176 Boechera stricta Bostr.26675s0176 I 0.767
OS12G0583700 Oryza sativa OS12G0583700 I 0.766
MLOC_54674 Hordeum vulgare MLOC_54674 I 0.766
Si023013m.g Setaria italica Si023013m.g I 0.766
OPUNC12G15600 Oryza punctata OPUNC12G15600 I 0.766
mgf006006m Mimulus guttatus mgf006006m I 0.765
Solyc12g088390.1 Solanum lycopersicum Solyc12g088390.1 I 0.765
Bra037845 Brassica rapa Bra037845 I 0.764
Bra031834 Brassica rapa Bra031834 I 0.764
Bo2g168030 Brassica oleracea Bo2g168030 I 0.764
evm.TU.supercontig_6.32 Carica papaya evm.TU.supercontig_6.32 I 0.764
Bo9g019120 Brassica oleracea Bo9g019120 I 0.764
AZF1 Arabidopsis thaliana AT5G67450 D 0.764
28152.m000908 Ricinus communis 28152.m000908 I 0.763
PGSC0003DMG400002383 Solanum tuberosum PGSC0003DMG400002383 I 0.763
PGSC0003DMG400041467 Solanum tuberosum PGSC0003DMG400041467 I 0.763
Cucsa.219210 Cucumis sativus Cucsa.219210 I 0.763
cassava43667.valid.m1 Manihot esculenta cassava43667.valid.m1 I 0.763
29661.m000908 Ricinus communis 29661.m000908 I 0.763
Bra018817 Brassica rapa Bra018817 I 0.762
MLOC_51405 Hordeum vulgare MLOC_51405 I 0.762
cassava12475.valid.m1 Manihot esculenta cassava12475.valid.m1 I 0.762
GSMUA_Achr5G08730_001 Musa acuminata GSMUA_Achr5G08730_001 I 0.762
fgenesh1_pm.C_scaffold_1003183 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1003183 I 0.762
cassava32957.m1 Manihot esculenta cassava32957.m1 I 0.762
LPERR03G21480 Leersia perrieri LPERR03G21480 I 0.762
Cla022966 Citrullus lanatus Cla022966 I 0.760
Cucsa.395710 Cucumis sativus Cucsa.395710 I 0.760
OB03G42170 Oryza brachyantha OB03G42170 I 0.758
BGIOSGA010468 Oryza indica BGIOSGA010468 I 0.757
OBART03G22570 Oryza barthii OBART03G22570 I 0.757
ORGLA03G0210300 Oryza glaberrima ORGLA03G0210300 I 0.757
ORUFI03G23240 Oryza rufipogon ORUFI03G23240 I 0.757
OS03G0437200 Oryza sativa OS03G0437200 I 0.757
OLONG_027628 Oryza longistaminata OLONG_027628 I 0.757
OGLUM03G23350 Oryza glumaepatula OGLUM03G23350 I 0.757
LPERR03G19200 Leersia perrieri LPERR03G19200 I 0.757
OB03G31780 Oryza brachyantha OB03G31780 I 0.757
BRADI1G16010 Brachypodium distachyon BRADI1G16010 I 0.757