Cla022966 (Citrullus lanatus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cla022966 T133973_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.785 0.826
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.784 0.804
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.784 0.804
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.784 0.804
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.770 0.761
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.770 0.761
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.761 0.761
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.759 0.674
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.759 0.652
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla022966 C2H2 ZF 22 44
Cla022966 C2H2 ZF 73 95

Links

Other C2H2 ZF family TFs
Other Citrullus lanatus TFs

146 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cucsa.395710 Cucumis sativus Cucsa.395710 I 0.827
PGSC0003DMG400034322 Solanum tuberosum PGSC0003DMG400034322 I 0.801
AZF3 Arabidopsis lyrata scaffold_800768.1 I 0.791
AZF3 Arabidopsis thaliana AT5G43170 I 0.791
Thhalv10014546m.g Eutrema salsugineum Thhalv10014546m.g I 0.785
Bostr.3148s0159 Boechera stricta Bostr.3148s0159 I 0.785
Bo7g065200 Brassica oleracea Bo7g065200 I 0.785
Bostr.2128s0015 Boechera stricta Bostr.2128s0015 I 0.785
Bo9g181170 Brassica oleracea Bo9g181170 I 0.785
Bra033666 Brassica rapa Bra033666 I 0.785
Cagra.9217s0012 Capsella grandiflora Cagra.9217s0012 I 0.785
Bra009464 Brassica rapa Bra009464 I 0.785
C2H2 Arabidopsis lyrata scaffold_600374.1 I 0.785
Carubv10001868m.g Capsella rubella Carubv10001868m.g I 0.785
ZAT6 Arabidopsis thaliana AT5G04340 D 0.785
GSMUA_Achr2G13410_001 Musa acuminata GSMUA_Achr2G13410_001 I 0.785
ZAT10 Arabidopsis thaliana AT1G27730 D 0.784
Bra010922 Brassica rapa Bra010922 I 0.784
Bostr.15697s0099 Boechera stricta Bostr.15697s0099 I 0.784
Bo3g142840 Brassica oleracea Bo3g142840 I 0.784
Bo7g048650 Brassica oleracea Bo7g048650 I 0.784
STZ Arabidopsis lyrata fgenesh2_kg.1__2932__AT1G27730.1 I 0.784
BRADI4G03340 Brachypodium distachyon BRADI4G03340 I 0.782
Pavir.Ba01050 Panicum virgatum Pavir.Ba01050 I 0.778
Pavir.J15191 Panicum virgatum Pavir.J15191 I 0.778
Si032711m.g Setaria italica Si032711m.g I 0.778
AC185108.3_FG011 Zea mays AC185108.3_FG011 I 0.772
Sb02g038070 Sorghum bicolor Sb02g038070 I 0.772
Solyc01g107170.2 Solanum lycopersicum Solyc01g107170.2 I 0.771
cassava43667.valid.m1 Manihot esculenta cassava43667.valid.m1 I 0.771
Gorai.010G025200 Gossypium raimondii Gorai.010G025200 I 0.771
Gorai.002G132600 Gossypium raimondii Gorai.002G132600 I 0.771
28152.m000908 Ricinus communis 28152.m000908 I 0.771
OB03G42170 Oryza brachyantha OB03G42170 I 0.771
PGSC0003DMG400041467 Solanum tuberosum PGSC0003DMG400041467 I 0.771
PGSC0003DMG400011548 Solanum tuberosum PGSC0003DMG400011548 I 0.771
cassava12475.valid.m1 Manihot esculenta cassava12475.valid.m1 I 0.770
Bo2g168030 Brassica oleracea Bo2g168030 I 0.770
Bo1g081350 Brassica oleracea Bo1g081350 I 0.770
evm.TU.supercontig_6.32 Carica papaya evm.TU.supercontig_6.32 I 0.770
Bra037845 Brassica rapa Bra037845 I 0.770
Thhalv10010909m.g Eutrema salsugineum Thhalv10010909m.g I 0.770
Bostr.26675s0176 Boechera stricta Bostr.26675s0176 I 0.770
Bra018817 Brassica rapa Bra018817 I 0.770
Bra012914 Brassica rapa Bra012914 I 0.770
Bra031834 Brassica rapa Bra031834 I 0.770
Bo9g019120 Brassica oleracea Bo9g019120 I 0.770
AZF1 Arabidopsis thaliana AT5G67450 D 0.770
Bra029985 Brassica rapa Bra029985 I 0.770
Solyc12g088390.1 Solanum lycopersicum Solyc12g088390.1 I 0.769
cassava32957.m1 Manihot esculenta cassava32957.m1 I 0.767
AMTR_s00137p00104280 Amborella trichopoda AMTR_s00137p00104280 I 0.766
Gorai.004G164000 Gossypium raimondii Gorai.004G164000 I 0.766
Ca_23672 Cicer arietinum Ca_23672 I 0.765
evm.TU.supercontig_2070.1 Carica papaya evm.TU.supercontig_2070.1 I 0.765
Ciclev10020499m.g Citrus clementina Ciclev10020499m.g I 0.765
GLYMA01G18606 Glycine max GLYMA01G18606 I 0.765
orange1.1g044606m.g Citrus sinensis orange1.1g044606m.g I 0.765
Gorai.001G175400 Gossypium raimondii Gorai.001G175400 I 0.765
MTR_0160s0030 Medicago truncatula MTR_0160s0030 I 0.765
GLYMA03G03950 Glycine max GLYMA03G03950 I 0.765
VIT_15s0021g02720 Vitis vinifera VIT_15s0021g02720 I 0.765
GLYMA01G32981 Glycine max GLYMA01G32981 I 0.765
BRADI4G03410 Brachypodium distachyon BRADI4G03410 I 0.763
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.761
mgf021789m Mimulus guttatus mgf021789m I 0.761
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.761
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.761
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.761
MDP0000573176 Malus domestica MDP0000573176 I 0.761
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.761
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.761
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I 0.761
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I 0.761
PK10188.1 Cannabis sativa PK10188.1 I 0.761
chr1.CM0050.50.nc Lotus japonicus chr1.CM0050.50.nc I 0.761
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.761
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.761
chr1.LjT45O14.140.nd Lotus japonicus chr1.LjT45O14.140.nd I 0.761
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.761
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.761
Gorai.005G232300 Gossypium raimondii Gorai.005G232300 I 0.761
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.761
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.761
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.761
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.761
MDP0000762756 Malus domestica MDP0000762756 I 0.761
MDP0000319225 Malus domestica MDP0000319225 I 0.761
MDP0000198015 Malus domestica MDP0000198015 I 0.761
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.761
TCM_007214 Theobroma cacao TCM_007214 I 0.761
PGSC0003DMG400002383 Solanum tuberosum PGSC0003DMG400002383 I 0.761
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.761
Bo5g113850 Brassica oleracea Bo5g113850 I 0.761
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I 0.761
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.761
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.761
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.761
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.761
Bra022436 Brassica rapa Bra022436 I 0.761
Bra038219 Brassica rapa Bra038219 I 0.761
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.761
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.761
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.761
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.761
TCM_034720 Theobroma cacao TCM_034720 I 0.761
PRUPE_ppa011060mg Prunus persica PRUPE_ppa011060mg I 0.761
Ca_01586 Cicer arietinum Ca_01586 I 0.761
Ca_18364 Cicer arietinum Ca_18364 I 0.761
Bo1g113530 Brassica oleracea Bo1g113530 I 0.761
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.761
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.761
Pm021284 Prunus mume Pm021284 I 0.761
Cucsa.352740 Cucumis sativus Cucsa.352740 I 0.761
AZF2 Arabidopsis thaliana AT3G19580 D 0.761
Pm005390 Prunus mume Pm005390 I 0.761
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.760
mgf006006m Mimulus guttatus mgf006006m I 0.760
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.760
Bo5g052290 Brassica oleracea Bo5g052290 I 0.760
TCM_000780 Theobroma cacao TCM_000780 I 0.760
Bra032845 Brassica rapa Bra032845 I 0.760
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I 0.760
30170.m013751 Ricinus communis 30170.m013751 I 0.760
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.760
ZAT4 Arabidopsis thaliana AT2G45120 D 0.759
SapurV1A.0248s0230 Salix purpurea SapurV1A.0248s0230 I 0.759
ZAT9 Arabidopsis thaliana AT3G60580 D 0.759
Bo3g037560 Brassica oleracea Bo3g037560 I 0.759
Bo4g195370 Brassica oleracea Bo4g195370 I 0.759
Thhalv10001538m.g Eutrema salsugineum Thhalv10001538m.g I 0.759
Bra000372 Brassica rapa Bra000372 I 0.759
MTR_4g027440 Medicago truncatula MTR_4g027440 I 0.759
Cagra.6011s0004 Capsella grandiflora Cagra.6011s0004 I 0.759
Carubv10017660m.g Capsella rubella Carubv10017660m.g I 0.759
Cagra.0239s0063 Capsella grandiflora Cagra.0239s0063 I 0.759
Bostr.25993s0262 Boechera stricta Bostr.25993s0262 I 0.759
Bostr.13158s0058 Boechera stricta Bostr.13158s0058 I 0.759
Carubv10023569m.g Capsella rubella Carubv10023569m.g I 0.759
scaffold_503291.1 Arabidopsis lyrata scaffold_503291.1 I 0.759
fgenesh2_kg.4__2705__AT2G45120.1 Arabidopsis lyrata fgenesh2_kg.4__2705__AT2G45120.1 I 0.759
GRMZM2G455889 Zea mays GRMZM2G455889 I 0.759
Lus10009278.g Linum usitatissimum Lus10009278.g I 0.759
Bra040325 Brassica rapa Bra040325 I 0.759
POPTR_0002s14460 Populus trichocarpa POPTR_0002s14460 I 0.759
SapurV1A.0033s0440 Salix purpurea SapurV1A.0033s0440 I 0.758