GRMZM2G455889 (Zea mays)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 GRMZM2G455889 T118628_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
DISCONTINUED: This record has been withdrawn by NCBI staff. This record represented a gene that is not currently annotated by NCBI.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.762 0.696
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.762 0.696
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.755 0.674
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G455889_P01 C2H2 ZF 378 400
GRMZM2G455889_P01 C2H2 ZF 424 446

Links

Other C2H2 ZF family TFs
Other Zea mays TFs

99 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AC211702.2_FG002 Zea mays AC211702.2_FG002 I 0.806
GSMUA_Achr2G13410_001 Musa acuminata GSMUA_Achr2G13410_001 I 0.801
chr1.CM0050.50.nc Lotus japonicus chr1.CM0050.50.nc I 0.779
Cucsa.352740 Cucumis sativus Cucsa.352740 I 0.779
chr1.LjT45O14.140.nd Lotus japonicus chr1.LjT45O14.140.nd I 0.779
AMTR_s00137p00104280 Amborella trichopoda AMTR_s00137p00104280 I 0.776
Bra029985 Brassica rapa Bra029985 I 0.767
Bra012914 Brassica rapa Bra012914 I 0.767
Thhalv10010909m.g Eutrema salsugineum Thhalv10010909m.g I 0.767
Bo1g081350 Brassica oleracea Bo1g081350 I 0.767
Bo4g195370 Brassica oleracea Bo4g195370 I 0.766
Bra040325 Brassica rapa Bra040325 I 0.766
Bra000372 Brassica rapa Bra000372 I 0.766
Bostr.26675s0176 Boechera stricta Bostr.26675s0176 I 0.766
Thhalv10001538m.g Eutrema salsugineum Thhalv10001538m.g I 0.766
Bo3g037560 Brassica oleracea Bo3g037560 I 0.766
Gorai.010G025200 Gossypium raimondii Gorai.010G025200 I 0.765
PGSC0003DMG400011548 Solanum tuberosum PGSC0003DMG400011548 I 0.765
Gorai.002G132600 Gossypium raimondii Gorai.002G132600 I 0.765
OB03G42170 Oryza brachyantha OB03G42170 I 0.765
evm.TU.supercontig_6.32 Carica papaya evm.TU.supercontig_6.32 I 0.762
Solyc12g088390.1 Solanum lycopersicum Solyc12g088390.1 I 0.762
Bra037845 Brassica rapa Bra037845 I 0.762
Bo2g168030 Brassica oleracea Bo2g168030 I 0.762
Bra031834 Brassica rapa Bra031834 I 0.762
Bo9g019120 Brassica oleracea Bo9g019120 I 0.762
AZF1 Arabidopsis thaliana AT5G67450 D 0.762
Traes_2BS_DD07C2EE6 Triticum aestivum Traes_2BS_DD07C2EE6 N 0.761
Sb02g038000 Sorghum bicolor Sb02g038000 N 0.761
cassava12475.valid.m1 Manihot esculenta cassava12475.valid.m1 I 0.761
cassava32957.m1 Manihot esculenta cassava32957.m1 I 0.761
Pavir.J15304 Panicum virgatum Pavir.J15304 N 0.761
Pavir.J16973 Panicum virgatum Pavir.J16973 N 0.761
PGSC0003DMG400045547 Solanum tuberosum PGSC0003DMG400045547 I 0.760
28152.m000908 Ricinus communis 28152.m000908 I 0.760
Bra018817 Brassica rapa Bra018817 I 0.760
Cucsa.219210 Cucumis sativus Cucsa.219210 I 0.760
PGSC0003DMG400041467 Solanum tuberosum PGSC0003DMG400041467 I 0.760
cassava43667.valid.m1 Manihot esculenta cassava43667.valid.m1 I 0.760
Cucsa.395710 Cucumis sativus Cucsa.395710 I 0.759
PGSC0003DMG400034322 Solanum tuberosum PGSC0003DMG400034322 I 0.759
Cla022966 Citrullus lanatus Cla022966 I 0.759
Bo2g161550 Brassica oleracea Bo2g161550 N 0.758
Bra029315 Brassica rapa Bra029315 N 0.758
Bostr.15697s0099 Boechera stricta Bostr.15697s0099 I 0.757
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.757
Bo7g048650 Brassica oleracea Bo7g048650 I 0.757
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.756
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.756
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.755
MDP0000762756 Malus domestica MDP0000762756 I 0.755
MDP0000573176 Malus domestica MDP0000573176 I 0.755
MDP0000319225 Malus domestica MDP0000319225 I 0.755
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.755
Bra038219 Brassica rapa Bra038219 I 0.755
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.755
Gorai.005G232300 Gossypium raimondii Gorai.005G232300 I 0.755
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.755
Bra022436 Brassica rapa Bra022436 I 0.755
MDP0000198015 Malus domestica MDP0000198015 I 0.755
Bra009464 Brassica rapa Bra009464 I 0.755
Bo1g113530 Brassica oleracea Bo1g113530 I 0.755
PK10188.1 Cannabis sativa PK10188.1 I 0.755
ZAT6 Arabidopsis thaliana AT5G04340 D 0.755
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.755
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.755
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.755
Thhalv10014546m.g Eutrema salsugineum Thhalv10014546m.g I 0.755
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.755
Bo9g181170 Brassica oleracea Bo9g181170 I 0.755
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.755
Bo5g113850 Brassica oleracea Bo5g113850 I 0.755
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.755
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.755
Pm005390 Prunus mume Pm005390 I 0.755
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.755
Pm021284 Prunus mume Pm021284 I 0.755
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.755
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.755
Ca_18364 Cicer arietinum Ca_18364 I 0.755
Ca_01586 Cicer arietinum Ca_01586 I 0.755
TCM_034720 Theobroma cacao TCM_034720 I 0.755
C2H2 Arabidopsis lyrata scaffold_600374.1 I 0.755
PRUPE_ppa011060mg Prunus persica PRUPE_ppa011060mg I 0.755
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.755
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.755
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.755
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.755
Bostr.3148s0159 Boechera stricta Bostr.3148s0159 I 0.755
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.755
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.755
TCM_007214 Theobroma cacao TCM_007214 I 0.755
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.755
Bostr.2128s0015 Boechera stricta Bostr.2128s0015 I 0.755
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.755
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.755
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.755
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.755
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.755