BGIOSGA010468 (Oryza indica)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 BGIOSGA010468 T081507_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.762 0.783
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.762 0.783
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.762 0.739
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.762 0.739
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.762 0.739
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.758 0.783
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.758 0.739
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BGIOSGA010468-PA C2H2 ZF 73 95
BGIOSGA010468-PA C2H2 ZF 135 157

Links

Other C2H2 ZF family TFs
Other Oryza indica TFs

145 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ORGLA03G0210300 Oryza glaberrima ORGLA03G0210300 I 0.827
ORUFI03G23240 Oryza rufipogon ORUFI03G23240 I 0.827
OLONG_027628 Oryza longistaminata OLONG_027628 I 0.827
OGLUM03G23350 Oryza glumaepatula OGLUM03G23350 I 0.827
OBART03G22570 Oryza barthii OBART03G22570 I 0.827
OB03G31780 Oryza brachyantha OB03G31780 I 0.827
OS03G0437200 Oryza sativa OS03G0437200 I 0.827
LPERR03G19200 Leersia perrieri LPERR03G19200 I 0.803
BRADI1G16010 Brachypodium distachyon BRADI1G16010 I 0.798
Ca_05641 Cicer arietinum Ca_05641 I 0.787
GLYMA10G40400 Glycine max GLYMA10G40400 I 0.787
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I 0.782
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I 0.782
OPUNC12G15600 Oryza punctata OPUNC12G15600 I 0.776
OS12G0583700 Oryza sativa OS12G0583700 I 0.776
Sb01g031920 Sorghum bicolor Sb01g031920 N 0.776
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I 0.776
LPERR03G21480 Leersia perrieri LPERR03G21480 I 0.776
OB03G42170 Oryza brachyantha OB03G42170 I 0.773
BRADI2G49250 Brachypodium distachyon BRADI2G49250 N 0.771
F775_12743 Aegilops tauschii F775_12743 N 0.771
OPUNC03G21190 Oryza punctata OPUNC03G21190 N 0.771
OGLUM03G23340 Oryza glumaepatula OGLUM03G23340 N 0.771
LPERR03G19190 Leersia perrieri LPERR03G19190 N 0.771
ORUFI03G23230 Oryza rufipogon ORUFI03G23230 N 0.771
ORGLA03G0210200 Oryza glaberrima ORGLA03G0210200 N 0.771
OS11G0340477 Oryza sativa OS11G0340477 N 0.771
Si037516m.g Setaria italica Si037516m.g N 0.771
Traes_2BS_494F02775 Triticum aestivum Traes_2BS_494F02775 N 0.771
Traes_2DS_11ADF414D Triticum aestivum Traes_2DS_11ADF414D N 0.771
BGIOSGA010469 Oryza indica BGIOSGA010469 N 0.771
OBART03G22560 Oryza barthii OBART03G22560 N 0.771
BGIOSGA010470 Oryza indica BGIOSGA010470 N 0.771
OB03G31790 Oryza brachyantha OB03G31790 N 0.771
GRMZM5G883760 Zea mays GRMZM5G883760 N 0.771
OS03G0437100 Oryza sativa OS03G0437100 N 0.771
MLOC_70662 Hordeum vulgare MLOC_70662 I 0.768
MLOC_51405 Hordeum vulgare MLOC_51405 I 0.766
Pavir.Ba01050 Panicum virgatum Pavir.Ba01050 I 0.766
Si032711m.g Setaria italica Si032711m.g I 0.766
Solyc01g107170.2 Solanum lycopersicum Solyc01g107170.2 I 0.766
AC185108.3_FG011 Zea mays AC185108.3_FG011 I 0.766
Sb02g038070 Sorghum bicolor Sb02g038070 I 0.766
Pavir.J15191 Panicum virgatum Pavir.J15191 I 0.766
Carubv10001868m.g Capsella rubella Carubv10001868m.g I 0.763
Cagra.9217s0012 Capsella grandiflora Cagra.9217s0012 I 0.763
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I 0.763
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I 0.763
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I 0.763
Bra031834 Brassica rapa Bra031834 I 0.762
AZF1 Arabidopsis thaliana AT5G67450 D 0.762
Bra037845 Brassica rapa Bra037845 I 0.762
STZ Arabidopsis lyrata fgenesh2_kg.1__2932__AT1G27730.1 I 0.762
Bo9g019120 Brassica oleracea Bo9g019120 I 0.762
TCM_000780 Theobroma cacao TCM_000780 I 0.762
30170.m013751 Ricinus communis 30170.m013751 I 0.762
Bo3g142840 Brassica oleracea Bo3g142840 I 0.762
Bo2g168030 Brassica oleracea Bo2g168030 I 0.762
ZAT10 Arabidopsis thaliana AT1G27730 D 0.762
Bra010922 Brassica rapa Bra010922 I 0.762
PGSC0003DMG400026020 Solanum tuberosum PGSC0003DMG400026020 I 0.760
Solyc01g090840.2 Solanum lycopersicum Solyc01g090840.2 I 0.760
cassava14164.m1 Manihot esculenta cassava14164.m1 I 0.760
30174.m008818 Ricinus communis 30174.m008818 I 0.760
cassava19892.m1 Manihot esculenta cassava19892.m1 I 0.760
mgf017082m Mimulus guttatus mgf017082m I 0.760
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I 0.759
Eucgr.D02497 Eucalyptus grandis Eucgr.D02497 I 0.759
Gorai.008G106500 Gossypium raimondii Gorai.008G106500 I 0.759
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.759
mgf021094m Mimulus guttatus mgf021094m I 0.759
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.759
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.758
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.758
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.758
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.758
Bo1g113530 Brassica oleracea Bo1g113530 I 0.758
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.758
chr1.LjT45O14.140.nd Lotus japonicus chr1.LjT45O14.140.nd I 0.758
Bostr.3148s0159 Boechera stricta Bostr.3148s0159 I 0.758
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.758
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.758
Bostr.2128s0015 Boechera stricta Bostr.2128s0015 I 0.758
chr1.CM0050.50.nc Lotus japonicus chr1.CM0050.50.nc I 0.758
PK10188.1 Cannabis sativa PK10188.1 I 0.758
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.758
MDP0000762756 Malus domestica MDP0000762756 I 0.758
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.758
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.758
AZF2 Arabidopsis thaliana AT3G19580 D 0.758
Thhalv10014546m.g Eutrema salsugineum Thhalv10014546m.g I 0.758
ZAT6 Arabidopsis thaliana AT5G04340 D 0.758
MDP0000573176 Malus domestica MDP0000573176 I 0.758
MDP0000319225 Malus domestica MDP0000319225 I 0.758
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.758
BGIOSGA026045 Oryza indica BGIOSGA026045 N 0.758
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.758
Gorai.005G232300 Gossypium raimondii Gorai.005G232300 I 0.758
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.758
MDP0000198015 Malus domestica MDP0000198015 I 0.758
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.758
Cucsa.352740 Cucumis sativus Cucsa.352740 I 0.758
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.758
Pm005390 Prunus mume Pm005390 I 0.758
OS07G0588600 Oryza sativa OS07G0588600 N 0.758
ORUFI07G21440 Oryza rufipogon ORUFI07G21440 N 0.758
Bra033666 Brassica rapa Bra033666 I 0.758
Bra022436 Brassica rapa Bra022436 I 0.758
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.758
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.758
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.758
Bra038219 Brassica rapa Bra038219 I 0.758
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.758
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.758
LPERR07G17860 Leersia perrieri LPERR07G17860 N 0.758
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.758
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.758
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.758
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.758
ONIVA07G18980 Oryza nivara ONIVA07G18980 N 0.758
C2H2 Arabidopsis lyrata scaffold_600374.1 I 0.758
Bra009464 Brassica rapa Bra009464 I 0.758
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.758
TCM_007214 Theobroma cacao TCM_007214 I 0.758
TCM_034720 Theobroma cacao TCM_034720 I 0.758
Bo9g181170 Brassica oleracea Bo9g181170 I 0.758
Bo5g113850 Brassica oleracea Bo5g113850 I 0.758
Ca_01586 Cicer arietinum Ca_01586 I 0.758
Ca_18364 Cicer arietinum Ca_18364 I 0.758
Bo7g065200 Brassica oleracea Bo7g065200 I 0.758
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.758
Pm021284 Prunus mume Pm021284 I 0.758
Thhalv10010909m.g Eutrema salsugineum Thhalv10010909m.g I 0.757
GRMZM2G338056 Zea mays GRMZM2G338056 I 0.757
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.757
Bostr.15697s0099 Boechera stricta Bostr.15697s0099 I 0.757
Bo7g048650 Brassica oleracea Bo7g048650 I 0.757
evm.TU.supercontig_6.32 Carica papaya evm.TU.supercontig_6.32 I 0.757
Sb05g027450 Sorghum bicolor Sb05g027450 I 0.757
Bra012914 Brassica rapa Bra012914 I 0.757
Bo1g081350 Brassica oleracea Bo1g081350 I 0.757
Bra029985 Brassica rapa Bra029985 I 0.757
Bo5g052290 Brassica oleracea Bo5g052290 I 0.757
Bra032845 Brassica rapa Bra032845 I 0.757
Si037343m.g Setaria italica Si037343m.g N 0.756