Gorai.008G106500 (Gossypium raimondii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gorai.008G106500 T143047_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.796 0.848
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.796 0.848
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.795 0.804
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.768 0.652
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.008G106500.1 C2H2 ZF 189 211
Gorai.008G106500.1 C2H2 ZF 241 263

Links

Other C2H2 ZF family TFs
Other Gossypium raimondii TFs

179 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Eucgr.D02497 Eucalyptus grandis Eucgr.D02497 I 0.821
cassava19892.m1 Manihot esculenta cassava19892.m1 I 0.820
30174.m008818 Ricinus communis 30174.m008818 I 0.820
cassava14164.m1 Manihot esculenta cassava14164.m1 I 0.811
mgf021094m Mimulus guttatus mgf021094m I 0.811
mgf017082m Mimulus guttatus mgf017082m I 0.805
PGSC0003DMG400026020 Solanum tuberosum PGSC0003DMG400026020 I 0.802
evm.TU.supercontig_2070.1 Carica papaya evm.TU.supercontig_2070.1 I 0.802
Gorai.001G175400 Gossypium raimondii Gorai.001G175400 I 0.802
VIT_15s0021g02720 Vitis vinifera VIT_15s0021g02720 I 0.802
Solyc01g090840.2 Solanum lycopersicum Solyc01g090840.2 I 0.802
Gorai.004G164000 Gossypium raimondii Gorai.004G164000 I 0.801
Eucgr.K00165 Eucalyptus grandis Eucgr.K00165 I 0.800
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I 0.798
MLOC_51405 Hordeum vulgare MLOC_51405 I 0.798
OS12G0583700 Oryza sativa OS12G0583700 I 0.798
OPUNC12G15600 Oryza punctata OPUNC12G15600 I 0.798
SapurV1A.0033s0440 Salix purpurea SapurV1A.0033s0440 I 0.797
SapurV1A.0248s0230 Salix purpurea SapurV1A.0248s0230 I 0.796
ZAT9 Arabidopsis thaliana AT3G60580 D 0.796
POPTR_0002s14460 Populus trichocarpa POPTR_0002s14460 I 0.796
Bra007545 Brassica rapa Bra007545 I 0.796
Carubv10017660m.g Capsella rubella Carubv10017660m.g I 0.796
Cagra.6011s0004 Capsella grandiflora Cagra.6011s0004 I 0.796
Bostr.13158s0058 Boechera stricta Bostr.13158s0058 I 0.796
Bo4g104940 Brassica oleracea Bo4g104940 I 0.796
fgenesh2_kg.4__2705__AT2G45120.1 Arabidopsis lyrata fgenesh2_kg.4__2705__AT2G45120.1 I 0.796
ZAT4 Arabidopsis thaliana AT2G45120 D 0.796
Thhalv10006508m.g Eutrema salsugineum Thhalv10006508m.g I 0.796
Bra003422 Brassica rapa Bra003422 I 0.796
Bra014483 Brassica rapa Bra014483 I 0.796
Bostr.25993s0262 Boechera stricta Bostr.25993s0262 I 0.796
Bo8g095300 Brassica oleracea Bo8g095300 I 0.796
Bo6g077190 Brassica oleracea Bo6g077190 I 0.796
scaffold_503291.1 Arabidopsis lyrata scaffold_503291.1 I 0.796
ZAT1 Arabidopsis thaliana AT1G02030 D 0.795
Bostr.5325s0123 Boechera stricta Bostr.5325s0123 I 0.795
orange1.1g044606m.g Citrus sinensis orange1.1g044606m.g I 0.793
PGSC0003DMG400020929 Solanum tuberosum PGSC0003DMG400020929 I 0.793
MTR_0160s0030 Medicago truncatula MTR_0160s0030 I 0.793
GLYMA03G03950 Glycine max GLYMA03G03950 I 0.793
GLYMA01G32981 Glycine max GLYMA01G32981 I 0.793
Ca_23672 Cicer arietinum Ca_23672 I 0.793
Ciclev10020499m.g Citrus clementina Ciclev10020499m.g I 0.793
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I 0.792
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I 0.792
Ca_05641 Cicer arietinum Ca_05641 I 0.792
GLYMA10G40400 Glycine max GLYMA10G40400 I 0.792
Cagra.0239s0063 Capsella grandiflora Cagra.0239s0063 I 0.791
Lus10009278.g Linum usitatissimum Lus10009278.g I 0.791
Carubv10023569m.g Capsella rubella Carubv10023569m.g I 0.791
GSMUA_Achr11G21040_001 Musa acuminata GSMUA_Achr11G21040_001 I 0.791
Solyc03g115450.1 Solanum lycopersicum Solyc03g115450.1 I 0.790
PGSC0003DMG400024550 Solanum tuberosum PGSC0003DMG400024550 I 0.790
GLYMA01G18606 Glycine max GLYMA01G18606 I 0.788
LPERR03G21480 Leersia perrieri LPERR03G21480 I 0.788
ORGLA04G0180800 Oryza glaberrima ORGLA04G0180800 I 0.785
ONIVA04G19260 Oryza nivara ONIVA04G19260 I 0.785
Si010615m.g Setaria italica Si010615m.g I 0.785
OMERI04G17450 Oryza meridionalis OMERI04G17450 I 0.785
OS04G0552700 Oryza sativa OS04G0552700 I 0.785
ORUFI04G22610 Oryza rufipogon ORUFI04G22610 I 0.785
OPUNC04G18700 Oryza punctata OPUNC04G18700 I 0.785
Pavir.Ab02618 Panicum virgatum Pavir.Ab02618 I 0.785
OB04G28040 Oryza brachyantha OB04G28040 I 0.785
GSMUA_Achr1G01550_001 Musa acuminata GSMUA_Achr1G01550_001 I 0.785
GRMZM2G170520 Zea mays GRMZM2G170520 I 0.785
BGIOSGA016894 Oryza indica BGIOSGA016894 I 0.785
BRADI3G33100 Brachypodium distachyon BRADI3G33100 I 0.785
OBART04G21020 Oryza barthii OBART04G21020 I 0.785
GSMUA_Achr4G26920_001 Musa acuminata GSMUA_Achr4G26920_001 I 0.785
OLONG_016061 Oryza longistaminata OLONG_016061 I 0.785
Thhalv10009894m.g Eutrema salsugineum Thhalv10009894m.g I 0.782
MTR_4g027440 Medicago truncatula MTR_4g027440 I 0.781
Pavir.Ba01050 Panicum virgatum Pavir.Ba01050 I 0.775
Sb02g038070 Sorghum bicolor Sb02g038070 I 0.775
ONIVA02G29150 Oryza nivara ONIVA02G29150 I 0.775
Si032711m.g Setaria italica Si032711m.g I 0.775
ORGLA02G0229600 Oryza glaberrima ORGLA02G0229600 I 0.775
TRIUR3_29692 Triticum urartu TRIUR3_29692 I 0.775
OGLUM02G27190 Oryza glumaepatula OGLUM02G27190 I 0.775
Lus10015888.g Linum usitatissimum Lus10015888.g I 0.775
AC185108.3_FG011 Zea mays AC185108.3_FG011 I 0.775
Pavir.J15191 Panicum virgatum Pavir.J15191 I 0.775
GSMUA_Achr5G15450_001 Musa acuminata GSMUA_Achr5G15450_001 I 0.775
OBART02G26700 Oryza barthii OBART02G26700 I 0.775
ORUFI02G28150 Oryza rufipogon ORUFI02G28150 I 0.775
OS02G0659500 Oryza sativa OS02G0659500 I 0.775
OMERI02G26030 Oryza meridionalis OMERI02G26030 I 0.775
BGIOSGA008755 Oryza indica BGIOSGA008755 I 0.775
MLOC_54674 Hordeum vulgare MLOC_54674 I 0.774
BRADI4G03410 Brachypodium distachyon BRADI4G03410 I 0.774
Si023013m.g Setaria italica Si023013m.g I 0.774
BRADI1G14750 Brachypodium distachyon BRADI1G14750 I 0.774
Bra000372 Brassica rapa Bra000372 I 0.772
Bo4g195370 Brassica oleracea Bo4g195370 I 0.772
Thhalv10001538m.g Eutrema salsugineum Thhalv10001538m.g I 0.772
Bo3g037560 Brassica oleracea Bo3g037560 I 0.772
Bra040325 Brassica rapa Bra040325 I 0.772
29661.m000908 Ricinus communis 29661.m000908 I 0.771
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I 0.769
cassava12475.valid.m1 Manihot esculenta cassava12475.valid.m1 I 0.769
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.769
Solyc12g088390.1 Solanum lycopersicum Solyc12g088390.1 I 0.769
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.769
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.769
30170.m013751 Ricinus communis 30170.m013751 I 0.769
mgf006006m Mimulus guttatus mgf006006m I 0.769
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.768
PK10188.1 Cannabis sativa PK10188.1 I 0.768
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.768
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.768
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.768
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.768
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.768
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.768
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.768
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.768
MDP0000573176 Malus domestica MDP0000573176 I 0.768
Gorai.010G025200 Gossypium raimondii Gorai.010G025200 I 0.768
MDP0000762756 Malus domestica MDP0000762756 I 0.768
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.768
Gorai.002G132600 Gossypium raimondii Gorai.002G132600 I 0.768
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.768
MDP0000319225 Malus domestica MDP0000319225 I 0.768
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.768
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.768
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I 0.768
MDP0000198015 Malus domestica MDP0000198015 I 0.768
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I 0.768
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.768
PRUPE_ppa011060mg Prunus persica PRUPE_ppa011060mg I 0.768
PGSC0003DMG400002383 Solanum tuberosum PGSC0003DMG400002383 I 0.768
Bo5g113850 Brassica oleracea Bo5g113850 I 0.768
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.768
PGSC0003DMG400011548 Solanum tuberosum PGSC0003DMG400011548 I 0.768
Bo1g113530 Brassica oleracea Bo1g113530 I 0.768
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I 0.768
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.768
Bra022436 Brassica rapa Bra022436 I 0.768
Bra038219 Brassica rapa Bra038219 I 0.768
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.768
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.768
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.768
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.768
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.768
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.768
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.768
PGSC0003DMG400041467 Solanum tuberosum PGSC0003DMG400041467 I 0.768
Pm005390 Prunus mume Pm005390 I 0.768
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.768
Pm021284 Prunus mume Pm021284 I 0.768
28152.m000908 Ricinus communis 28152.m000908 I 0.768
cassava43667.valid.m1 Manihot esculenta cassava43667.valid.m1 I 0.768
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.768
Ca_01586 Cicer arietinum Ca_01586 I 0.768
Ca_18364 Cicer arietinum Ca_18364 I 0.768
Solyc01g107170.2 Solanum lycopersicum Solyc01g107170.2 I 0.768
TCM_007214 Theobroma cacao TCM_007214 I 0.768
TCM_034720 Theobroma cacao TCM_034720 I 0.768
AZF2 Arabidopsis thaliana AT3G19580 D 0.768
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.768
GSMUA_AchrUn_randomG03030_001 Musa acuminata GSMUA_AchrUn_randomG03030_001 I 0.767
mgf021789m Mimulus guttatus mgf021789m I 0.766
Lus10038929.g Linum usitatissimum Lus10038929.g N 0.766
GSMUA_Achr5G08730_001 Musa acuminata GSMUA_Achr5G08730_001 I 0.764
GSMUA_Achr4G12160_001 Musa acuminata GSMUA_Achr4G12160_001 I 0.761
BGIOSGA010468 Oryza indica BGIOSGA010468 I 0.759
BRADI1G16010 Brachypodium distachyon BRADI1G16010 I 0.759
ORUFI03G23240 Oryza rufipogon ORUFI03G23240 I 0.759
OB03G31780 Oryza brachyantha OB03G31780 I 0.759
OS03G0437200 Oryza sativa OS03G0437200 I 0.759
OLONG_027628 Oryza longistaminata OLONG_027628 I 0.759
ORGLA03G0210300 Oryza glaberrima ORGLA03G0210300 I 0.759
OBART03G22570 Oryza barthii OBART03G22570 I 0.759
OGLUM03G23350 Oryza glumaepatula OGLUM03G23350 I 0.759
PGSC0003DMG400028275 Solanum tuberosum PGSC0003DMG400028275 I 0.758
TCM_014903 Theobroma cacao TCM_014903 I 0.757
evm.TU.supercontig_111.55 Carica papaya evm.TU.supercontig_111.55 N 0.756