GSMUA_Achr4G12160_001 (Musa acuminata)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 GSMUA_Achr4G12160_001 T118701_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.762 0.800
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.762 0.778
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.761 0.778
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GSMUA_Achr4P12160_001 C2H2 ZF 84 106
GSMUA_Achr4P12160_001 C2H2 ZF 113 134

Links

Other C2H2 ZF family TFs
Other Musa acuminata TFs

71 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OPUNC04G18700 Oryza punctata OPUNC04G18700 I 0.792
ONIVA04G19260 Oryza nivara ONIVA04G19260 I 0.792
GSMUA_AchrUn_randomG03030_001 Musa acuminata GSMUA_AchrUn_randomG03030_001 I 0.792
OMERI04G17450 Oryza meridionalis OMERI04G17450 I 0.792
OBART04G21020 Oryza barthii OBART04G21020 I 0.792
ORGLA04G0180800 Oryza glaberrima ORGLA04G0180800 I 0.792
OS04G0552700 Oryza sativa OS04G0552700 I 0.792
BGIOSGA016894 Oryza indica BGIOSGA016894 I 0.792
ORUFI04G22610 Oryza rufipogon ORUFI04G22610 I 0.792
GSMUA_Achr11G21040_001 Musa acuminata GSMUA_Achr11G21040_001 I 0.791
BRADI3G33100 Brachypodium distachyon BRADI3G33100 I 0.791
GSMUA_Achr4G26920_001 Musa acuminata GSMUA_Achr4G26920_001 I 0.791
OLONG_016061 Oryza longistaminata OLONG_016061 I 0.786
GSMUA_Achr1G01550_001 Musa acuminata GSMUA_Achr1G01550_001 I 0.786
OB04G28040 Oryza brachyantha OB04G28040 I 0.786
OBART02G26700 Oryza barthii OBART02G26700 I 0.782
ONIVA02G29150 Oryza nivara ONIVA02G29150 I 0.782
TRIUR3_29692 Triticum urartu TRIUR3_29692 I 0.782
OS02G0659500 Oryza sativa OS02G0659500 I 0.782
ORGLA02G0229600 Oryza glaberrima ORGLA02G0229600 I 0.782
OMERI02G26030 Oryza meridionalis OMERI02G26030 I 0.782
OGLUM02G27190 Oryza glumaepatula OGLUM02G27190 I 0.782
ORUFI02G28150 Oryza rufipogon ORUFI02G28150 I 0.782
GSMUA_Achr5G15450_001 Musa acuminata GSMUA_Achr5G15450_001 I 0.782
BGIOSGA008755 Oryza indica BGIOSGA008755 I 0.782
Lus10009278.g Linum usitatissimum Lus10009278.g I 0.773
Si010615m.g Setaria italica Si010615m.g I 0.768
cassava19892.m1 Manihot esculenta cassava19892.m1 I 0.768
30174.m008818 Ricinus communis 30174.m008818 I 0.768
POPTR_0002s14460 Populus trichocarpa POPTR_0002s14460 I 0.768
GRMZM2G170520 Zea mays GRMZM2G170520 I 0.768
SapurV1A.0033s0440 Salix purpurea SapurV1A.0033s0440 I 0.767
fgenesh2_kg.4__2705__AT2G45120.1 Arabidopsis lyrata fgenesh2_kg.4__2705__AT2G45120.1 I 0.762
Bostr.13158s0058 Boechera stricta Bostr.13158s0058 I 0.762
Bra040325 Brassica rapa Bra040325 I 0.762
VIT_15s0021g02720 Vitis vinifera VIT_15s0021g02720 I 0.762
Bostr.25993s0262 Boechera stricta Bostr.25993s0262 I 0.762
ZAT4 Arabidopsis thaliana AT2G45120 D 0.762
Cagra.0239s0063 Capsella grandiflora Cagra.0239s0063 I 0.762
evm.TU.supercontig_2070.1 Carica papaya evm.TU.supercontig_2070.1 I 0.762
Gorai.001G175400 Gossypium raimondii Gorai.001G175400 I 0.762
Carubv10023569m.g Capsella rubella Carubv10023569m.g I 0.762
Carubv10017660m.g Capsella rubella Carubv10017660m.g I 0.762
Bra014483 Brassica rapa Bra014483 I 0.762
Cagra.6011s0004 Capsella grandiflora Cagra.6011s0004 I 0.762
Pavir.Ab02618 Panicum virgatum Pavir.Ab02618 I 0.762
Solyc01g090840.2 Solanum lycopersicum Solyc01g090840.2 I 0.762
Thhalv10006508m.g Eutrema salsugineum Thhalv10006508m.g I 0.762
Bo3g037560 Brassica oleracea Bo3g037560 I 0.762
Bo4g104940 Brassica oleracea Bo4g104940 I 0.762
Bo4g195370 Brassica oleracea Bo4g195370 I 0.762
Bo8g095300 Brassica oleracea Bo8g095300 I 0.762
Bo6g077190 Brassica oleracea Bo6g077190 I 0.762
Bra003422 Brassica rapa Bra003422 I 0.762
ZAT9 Arabidopsis thaliana AT3G60580 D 0.762
scaffold_503291.1 Arabidopsis lyrata scaffold_503291.1 I 0.762
Bra007545 Brassica rapa Bra007545 I 0.762
Bra000372 Brassica rapa Bra000372 I 0.762
PGSC0003DMG400026020 Solanum tuberosum PGSC0003DMG400026020 I 0.762
Thhalv10001538m.g Eutrema salsugineum Thhalv10001538m.g I 0.762
SapurV1A.0248s0230 Salix purpurea SapurV1A.0248s0230 I 0.762
Gorai.008G106500 Gossypium raimondii Gorai.008G106500 I 0.761
Solyc03g115450.1 Solanum lycopersicum Solyc03g115450.1 I 0.761
PGSC0003DMG400024550 Solanum tuberosum PGSC0003DMG400024550 I 0.761
ZAT1 Arabidopsis thaliana AT1G02030 D 0.761
Gorai.004G164000 Gossypium raimondii Gorai.004G164000 I 0.761
Bostr.5325s0123 Boechera stricta Bostr.5325s0123 I 0.761
Eucgr.D02497 Eucalyptus grandis Eucgr.D02497 I 0.761
Lus10015888.g Linum usitatissimum Lus10015888.g I 0.758
cassava14164.m1 Manihot esculenta cassava14164.m1 I 0.758
PGSC0003DMG400020929 Solanum tuberosum PGSC0003DMG400020929 I 0.756