PGSC0003DMG400020929 (Solanum tuberosum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 PGSC0003DMG400020929 T125831_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.786 0.783
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.786 0.761
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.785 0.739
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.773 0.696
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.756 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400053945 C2H2 ZF 74 96
PGSC0003DMT400053945 C2H2 ZF 120 142

Links

Other C2H2 ZF family TFs
Other Solanum tuberosum TFs

182 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.008G106500 Gossypium raimondii Gorai.008G106500 I 0.793
evm.TU.supercontig_2070.1 Carica papaya evm.TU.supercontig_2070.1 I 0.792
Gorai.001G175400 Gossypium raimondii Gorai.001G175400 I 0.792
VIT_15s0021g02720 Vitis vinifera VIT_15s0021g02720 I 0.792
Gorai.004G164000 Gossypium raimondii Gorai.004G164000 I 0.791
Eucgr.D02497 Eucalyptus grandis Eucgr.D02497 I 0.787
SapurV1A.0033s0440 Salix purpurea SapurV1A.0033s0440 I 0.787
Lus10009278.g Linum usitatissimum Lus10009278.g I 0.786
Thhalv10006508m.g Eutrema salsugineum Thhalv10006508m.g I 0.786
Bostr.13158s0058 Boechera stricta Bostr.13158s0058 I 0.786
Bostr.25993s0262 Boechera stricta Bostr.25993s0262 I 0.786
cassava19892.m1 Manihot esculenta cassava19892.m1 I 0.786
GSMUA_Achr11G21040_001 Musa acuminata GSMUA_Achr11G21040_001 I 0.786
SapurV1A.0248s0230 Salix purpurea SapurV1A.0248s0230 I 0.786
Bra014483 Brassica rapa Bra014483 I 0.786
POPTR_0002s14460 Populus trichocarpa POPTR_0002s14460 I 0.786
scaffold_503291.1 Arabidopsis lyrata scaffold_503291.1 I 0.786
fgenesh2_kg.4__2705__AT2G45120.1 Arabidopsis lyrata fgenesh2_kg.4__2705__AT2G45120.1 I 0.786
30174.m008818 Ricinus communis 30174.m008818 I 0.786
Carubv10017660m.g Capsella rubella Carubv10017660m.g I 0.786
Carubv10023569m.g Capsella rubella Carubv10023569m.g I 0.786
ZAT9 Arabidopsis thaliana AT3G60580 D 0.786
ZAT4 Arabidopsis thaliana AT2G45120 D 0.786
Cagra.6011s0004 Capsella grandiflora Cagra.6011s0004 I 0.786
Bo4g104940 Brassica oleracea Bo4g104940 I 0.786
Cagra.0239s0063 Capsella grandiflora Cagra.0239s0063 I 0.786
Bo8g095300 Brassica oleracea Bo8g095300 I 0.786
Bra007545 Brassica rapa Bra007545 I 0.786
Bra003422 Brassica rapa Bra003422 I 0.786
Bo6g077190 Brassica oleracea Bo6g077190 I 0.786
Solyc03g115450.1 Solanum lycopersicum Solyc03g115450.1 I 0.785
ZAT1 Arabidopsis thaliana AT1G02030 D 0.785
PGSC0003DMG400024550 Solanum tuberosum PGSC0003DMG400024550 I 0.785
Bostr.5325s0123 Boechera stricta Bostr.5325s0123 I 0.785
MTR_0160s0030 Medicago truncatula MTR_0160s0030 I 0.782
Ciclev10020499m.g Citrus clementina Ciclev10020499m.g I 0.782
orange1.1g044606m.g Citrus sinensis orange1.1g044606m.g I 0.782
GLYMA01G32981 Glycine max GLYMA01G32981 I 0.782
29661.m000908 Ricinus communis 29661.m000908 I 0.782
GLYMA03G03950 Glycine max GLYMA03G03950 I 0.782
GLYMA01G18606 Glycine max GLYMA01G18606 I 0.782
Ca_23672 Cicer arietinum Ca_23672 I 0.782
OMERI04G17450 Oryza meridionalis OMERI04G17450 I 0.780
OLONG_016061 Oryza longistaminata OLONG_016061 I 0.780
OB04G28040 Oryza brachyantha OB04G28040 I 0.780
OBART04G21020 Oryza barthii OBART04G21020 I 0.780
ONIVA04G19260 Oryza nivara ONIVA04G19260 I 0.780
OPUNC04G18700 Oryza punctata OPUNC04G18700 I 0.780
OS04G0552700 Oryza sativa OS04G0552700 I 0.780
ORUFI04G22610 Oryza rufipogon ORUFI04G22610 I 0.780
Si010615m.g Setaria italica Si010615m.g I 0.780
ORGLA04G0180800 Oryza glaberrima ORGLA04G0180800 I 0.780
Pavir.Ab02618 Panicum virgatum Pavir.Ab02618 I 0.780
BRADI3G33100 Brachypodium distachyon BRADI3G33100 I 0.780
BGIOSGA016894 Oryza indica BGIOSGA016894 I 0.780
GSMUA_Achr4G26920_001 Musa acuminata GSMUA_Achr4G26920_001 I 0.780
GSMUA_Achr1G01550_001 Musa acuminata GSMUA_Achr1G01550_001 I 0.780
GRMZM2G170520 Zea mays GRMZM2G170520 I 0.780
BRADI1G14750 Brachypodium distachyon BRADI1G14750 I 0.779
MLOC_51405 Hordeum vulgare MLOC_51405 I 0.779
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I 0.779
mgf021094m Mimulus guttatus mgf021094m I 0.777
cassava14164.m1 Manihot esculenta cassava14164.m1 I 0.776
MTR_4g027440 Medicago truncatula MTR_4g027440 I 0.776
30170.m013751 Ricinus communis 30170.m013751 I 0.775
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.775
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.774
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.774
Si023013m.g Setaria italica Si023013m.g I 0.774
OS12G0583700 Oryza sativa OS12G0583700 I 0.774
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I 0.774
cassava12475.valid.m1 Manihot esculenta cassava12475.valid.m1 I 0.774
BRADI4G03410 Brachypodium distachyon BRADI4G03410 I 0.774
MLOC_54674 Hordeum vulgare MLOC_54674 I 0.774
OPUNC12G15600 Oryza punctata OPUNC12G15600 I 0.774
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.773
Pm021284 Prunus mume Pm021284 I 0.773
Bra038219 Brassica rapa Bra038219 I 0.773
cassava43667.valid.m1 Manihot esculenta cassava43667.valid.m1 I 0.773
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.773
Bra022436 Brassica rapa Bra022436 I 0.773
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.773
28152.m000908 Ricinus communis 28152.m000908 I 0.773
MDP0000198015 Malus domestica MDP0000198015 I 0.773
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.773
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I 0.773
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.773
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.773
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.773
Gorai.002G132600 Gossypium raimondii Gorai.002G132600 I 0.773
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.773
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I 0.773
AZF2 Arabidopsis thaliana AT3G19580 D 0.773
Gorai.010G025200 Gossypium raimondii Gorai.010G025200 I 0.773
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.773
Pm005390 Prunus mume Pm005390 I 0.773
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.773
Bo5g113850 Brassica oleracea Bo5g113850 I 0.773
PK10188.1 Cannabis sativa PK10188.1 I 0.773
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.773
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.773
Bo1g113530 Brassica oleracea Bo1g113530 I 0.773
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.773
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.773
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.773
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.773
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I 0.773
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.773
PRUPE_ppa011060mg Prunus persica PRUPE_ppa011060mg I 0.773
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.773
MDP0000573176 Malus domestica MDP0000573176 I 0.773
MDP0000762756 Malus domestica MDP0000762756 I 0.773
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.773
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I 0.773
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.773
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I 0.773
PGSC0003DMG400011548 Solanum tuberosum PGSC0003DMG400011548 I 0.773
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.773
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.773
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.773
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.773
TCM_034720 Theobroma cacao TCM_034720 I 0.773
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.773
Ca_01586 Cicer arietinum Ca_01586 I 0.773
Ca_05641 Cicer arietinum Ca_05641 I 0.773
TCM_007214 Theobroma cacao TCM_007214 I 0.773
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.773
MDP0000319225 Malus domestica MDP0000319225 I 0.773
Ca_18364 Cicer arietinum Ca_18364 I 0.773
GLYMA10G40400 Glycine max GLYMA10G40400 I 0.773
Thhalv10009894m.g Eutrema salsugineum Thhalv10009894m.g I 0.772
OGLUM02G27190 Oryza glumaepatula OGLUM02G27190 I 0.770
ORGLA02G0229600 Oryza glaberrima ORGLA02G0229600 I 0.770
BGIOSGA008755 Oryza indica BGIOSGA008755 I 0.770
ONIVA02G29150 Oryza nivara ONIVA02G29150 I 0.770
ORUFI02G28150 Oryza rufipogon ORUFI02G28150 I 0.770
OS02G0659500 Oryza sativa OS02G0659500 I 0.770
TRIUR3_29692 Triticum urartu TRIUR3_29692 I 0.770
Lus10015888.g Linum usitatissimum Lus10015888.g I 0.770
OMERI02G26030 Oryza meridionalis OMERI02G26030 I 0.770
mgf017082m Mimulus guttatus mgf017082m I 0.770
OBART02G26700 Oryza barthii OBART02G26700 I 0.770
GSMUA_Achr5G15450_001 Musa acuminata GSMUA_Achr5G15450_001 I 0.770
GSMUA_Achr5G08730_001 Musa acuminata GSMUA_Achr5G08730_001 I 0.769
mgf006006m Mimulus guttatus mgf006006m I 0.769
Solyc12g088390.1 Solanum lycopersicum Solyc12g088390.1 I 0.769
LPERR03G21480 Leersia perrieri LPERR03G21480 I 0.769
Solyc01g090840.2 Solanum lycopersicum Solyc01g090840.2 I 0.768
PGSC0003DMG400002383 Solanum tuberosum PGSC0003DMG400002383 I 0.768
PGSC0003DMG400041467 Solanum tuberosum PGSC0003DMG400041467 I 0.768
PGSC0003DMG400026020 Solanum tuberosum PGSC0003DMG400026020 I 0.768
mgf021789m Mimulus guttatus mgf021789m I 0.766
Eucgr.K00165 Eucalyptus grandis Eucgr.K00165 I 0.766
Thhalv10001538m.g Eutrema salsugineum Thhalv10001538m.g I 0.762
Bra000372 Brassica rapa Bra000372 I 0.762
GSMUA_AchrUn_randomG03030_001 Musa acuminata GSMUA_AchrUn_randomG03030_001 I 0.762
Bo3g037560 Brassica oleracea Bo3g037560 I 0.762
Bo4g195370 Brassica oleracea Bo4g195370 I 0.762
Bra040325 Brassica rapa Bra040325 I 0.762
orange1.1g041414m.g Citrus sinensis orange1.1g041414m.g I 0.761
orange1.1g044181m.g Citrus sinensis orange1.1g044181m.g I 0.761
orange1.1g040287m.g Citrus sinensis orange1.1g040287m.g I 0.761
cassava39064.m1 Manihot esculenta cassava39064.m1 I 0.761
Ciclev10032922m.g Citrus clementina Ciclev10032922m.g I 0.761
Eucgr.A01230 Eucalyptus grandis Eucgr.A01230 I 0.761
Ciclev10032899m.g Citrus clementina Ciclev10032899m.g I 0.761
Ciclev10032889m.g Citrus clementina Ciclev10032889m.g I 0.761
GSMUA_Achr11G24480_001 Musa acuminata GSMUA_Achr11G24480_001 I 0.761
GSMUA_Achr5G28550_001 Musa acuminata GSMUA_Achr5G28550_001 I 0.761
PGSC0003DMG400028275 Solanum tuberosum PGSC0003DMG400028275 I 0.758
Bra029315 Brassica rapa Bra029315 N 0.757
Gorai.012G006900 Gossypium raimondii Gorai.012G006900 I 0.757
Gorai.006G104800 Gossypium raimondii Gorai.006G104800 I 0.757
Eucgr.A01231 Eucalyptus grandis Eucgr.A01231 I 0.757
cassava15802.m1 Manihot esculenta cassava15802.m1 I 0.757
AMTR_s00137p00104280 Amborella trichopoda AMTR_s00137p00104280 I 0.757
POPTR_0006s12340 Populus trichocarpa POPTR_0006s12340 I 0.757
gene18205-v1.0-hybrid Fragaria vesca gene18205-v1.0-hybrid I 0.757
AT5G03510 Arabidopsis thaliana AT5G03510 D 0.756
GSMUA_Achr4G12160_001 Musa acuminata GSMUA_Achr4G12160_001 I 0.756
PRUPE_ppa012242mg Prunus persica PRUPE_ppa012242mg I 0.756
GSMUA_AchrUn_randomG07580_001 Musa acuminata GSMUA_AchrUn_randomG07580_001 I 0.756