OBART03G22570 (Oryza barthii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 OBART03G22570 T124631_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.762 0.783
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.762 0.783
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.762 0.739
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.762 0.739
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.762 0.739
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.758 0.783
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.758 0.739
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART03G22570.1 C2H2 ZF 73 95
OBART03G22570.1 C2H2 ZF 135 157

Links

Other C2H2 ZF family TFs
Other Oryza barthii TFs

145 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ORGLA03G0210300 Oryza glaberrima ORGLA03G0210300 I 0.827
OLONG_027628 Oryza longistaminata OLONG_027628 I 0.827
OGLUM03G23350 Oryza glumaepatula OGLUM03G23350 I 0.827
BGIOSGA010468 Oryza indica BGIOSGA010468 I 0.827
OB03G31780 Oryza brachyantha OB03G31780 I 0.827
OS03G0437200 Oryza sativa OS03G0437200 I 0.827
ORUFI03G23240 Oryza rufipogon ORUFI03G23240 I 0.827
LPERR03G19200 Leersia perrieri LPERR03G19200 I 0.803
BRADI1G16010 Brachypodium distachyon BRADI1G16010 I 0.798
GLYMA10G40400 Glycine max GLYMA10G40400 I 0.787
Ca_05641 Cicer arietinum Ca_05641 I 0.787
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I 0.782
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I 0.782
OS12G0583700 Oryza sativa OS12G0583700 I 0.776
Sb01g031920 Sorghum bicolor Sb01g031920 N 0.776
OPUNC12G15600 Oryza punctata OPUNC12G15600 I 0.776
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I 0.776
LPERR03G21480 Leersia perrieri LPERR03G21480 I 0.776
OB03G42170 Oryza brachyantha OB03G42170 I 0.773
OB03G31790 Oryza brachyantha OB03G31790 N 0.771
BRADI2G49250 Brachypodium distachyon BRADI2G49250 N 0.771
LPERR03G19190 Leersia perrieri LPERR03G19190 N 0.771
GRMZM5G883760 Zea mays GRMZM5G883760 N 0.771
OGLUM03G23340 Oryza glumaepatula OGLUM03G23340 N 0.771
ORGLA03G0210200 Oryza glaberrima ORGLA03G0210200 N 0.771
OBART03G22560 Oryza barthii OBART03G22560 N 0.771
F775_12743 Aegilops tauschii F775_12743 N 0.771
OPUNC03G21190 Oryza punctata OPUNC03G21190 N 0.771
OS11G0340477 Oryza sativa OS11G0340477 N 0.771
Traes_2DS_11ADF414D Triticum aestivum Traes_2DS_11ADF414D N 0.771
ORUFI03G23230 Oryza rufipogon ORUFI03G23230 N 0.771
BGIOSGA010470 Oryza indica BGIOSGA010470 N 0.771
BGIOSGA010469 Oryza indica BGIOSGA010469 N 0.771
Si037516m.g Setaria italica Si037516m.g N 0.771
Traes_2BS_494F02775 Triticum aestivum Traes_2BS_494F02775 N 0.771
OS03G0437100 Oryza sativa OS03G0437100 N 0.771
MLOC_70662 Hordeum vulgare MLOC_70662 I 0.768
Pavir.Ba01050 Panicum virgatum Pavir.Ba01050 I 0.766
Pavir.J15191 Panicum virgatum Pavir.J15191 I 0.766
AC185108.3_FG011 Zea mays AC185108.3_FG011 I 0.766
Solyc01g107170.2 Solanum lycopersicum Solyc01g107170.2 I 0.766
MLOC_51405 Hordeum vulgare MLOC_51405 I 0.766
Si032711m.g Setaria italica Si032711m.g I 0.766
Sb02g038070 Sorghum bicolor Sb02g038070 I 0.766
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I 0.763
Cagra.9217s0012 Capsella grandiflora Cagra.9217s0012 I 0.763
Carubv10001868m.g Capsella rubella Carubv10001868m.g I 0.763
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I 0.763
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I 0.763
Bra031834 Brassica rapa Bra031834 I 0.762
AZF1 Arabidopsis thaliana AT5G67450 D 0.762
Bra037845 Brassica rapa Bra037845 I 0.762
STZ Arabidopsis lyrata fgenesh2_kg.1__2932__AT1G27730.1 I 0.762
Bo9g019120 Brassica oleracea Bo9g019120 I 0.762
TCM_000780 Theobroma cacao TCM_000780 I 0.762
30170.m013751 Ricinus communis 30170.m013751 I 0.762
Bo3g142840 Brassica oleracea Bo3g142840 I 0.762
Bo2g168030 Brassica oleracea Bo2g168030 I 0.762
ZAT10 Arabidopsis thaliana AT1G27730 D 0.762
Bra010922 Brassica rapa Bra010922 I 0.762
PGSC0003DMG400026020 Solanum tuberosum PGSC0003DMG400026020 I 0.760
Solyc01g090840.2 Solanum lycopersicum Solyc01g090840.2 I 0.760
cassava14164.m1 Manihot esculenta cassava14164.m1 I 0.760
30174.m008818 Ricinus communis 30174.m008818 I 0.760
cassava19892.m1 Manihot esculenta cassava19892.m1 I 0.760
mgf017082m Mimulus guttatus mgf017082m I 0.760
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I 0.759
Eucgr.D02497 Eucalyptus grandis Eucgr.D02497 I 0.759
Gorai.008G106500 Gossypium raimondii Gorai.008G106500 I 0.759
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.759
mgf021094m Mimulus guttatus mgf021094m I 0.759
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.759
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.758
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.758
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.758
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.758
Bo1g113530 Brassica oleracea Bo1g113530 I 0.758
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.758
chr1.LjT45O14.140.nd Lotus japonicus chr1.LjT45O14.140.nd I 0.758
Bostr.3148s0159 Boechera stricta Bostr.3148s0159 I 0.758
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.758
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.758
Bostr.2128s0015 Boechera stricta Bostr.2128s0015 I 0.758
chr1.CM0050.50.nc Lotus japonicus chr1.CM0050.50.nc I 0.758
PK10188.1 Cannabis sativa PK10188.1 I 0.758
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.758
MDP0000762756 Malus domestica MDP0000762756 I 0.758
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.758
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.758
AZF2 Arabidopsis thaliana AT3G19580 D 0.758
Thhalv10014546m.g Eutrema salsugineum Thhalv10014546m.g I 0.758
ZAT6 Arabidopsis thaliana AT5G04340 D 0.758
MDP0000573176 Malus domestica MDP0000573176 I 0.758
MDP0000319225 Malus domestica MDP0000319225 I 0.758
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.758
BGIOSGA026045 Oryza indica BGIOSGA026045 N 0.758
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.758
Gorai.005G232300 Gossypium raimondii Gorai.005G232300 I 0.758
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.758
MDP0000198015 Malus domestica MDP0000198015 I 0.758
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.758
Cucsa.352740 Cucumis sativus Cucsa.352740 I 0.758
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.758
Pm005390 Prunus mume Pm005390 I 0.758
OS07G0588600 Oryza sativa OS07G0588600 N 0.758
ORUFI07G21440 Oryza rufipogon ORUFI07G21440 N 0.758
Bra033666 Brassica rapa Bra033666 I 0.758
Bra022436 Brassica rapa Bra022436 I 0.758
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.758
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.758
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.758
Bra038219 Brassica rapa Bra038219 I 0.758
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.758
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.758
LPERR07G17860 Leersia perrieri LPERR07G17860 N 0.758
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.758
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.758
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.758
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.758
ONIVA07G18980 Oryza nivara ONIVA07G18980 N 0.758
C2H2 Arabidopsis lyrata scaffold_600374.1 I 0.758
Bra009464 Brassica rapa Bra009464 I 0.758
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.758
TCM_007214 Theobroma cacao TCM_007214 I 0.758
TCM_034720 Theobroma cacao TCM_034720 I 0.758
Bo9g181170 Brassica oleracea Bo9g181170 I 0.758
Bo5g113850 Brassica oleracea Bo5g113850 I 0.758
Ca_01586 Cicer arietinum Ca_01586 I 0.758
Ca_18364 Cicer arietinum Ca_18364 I 0.758
Bo7g065200 Brassica oleracea Bo7g065200 I 0.758
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.758
Pm021284 Prunus mume Pm021284 I 0.758
Thhalv10010909m.g Eutrema salsugineum Thhalv10010909m.g I 0.757
GRMZM2G338056 Zea mays GRMZM2G338056 I 0.757
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.757
Bostr.15697s0099 Boechera stricta Bostr.15697s0099 I 0.757
Bo7g048650 Brassica oleracea Bo7g048650 I 0.757
evm.TU.supercontig_6.32 Carica papaya evm.TU.supercontig_6.32 I 0.757
Sb05g027450 Sorghum bicolor Sb05g027450 I 0.757
Bra012914 Brassica rapa Bra012914 I 0.757
Bo1g081350 Brassica oleracea Bo1g081350 I 0.757
Bra029985 Brassica rapa Bra029985 I 0.757
Bo5g052290 Brassica oleracea Bo5g052290 I 0.757
Bra032845 Brassica rapa Bra032845 I 0.757
Si037343m.g Setaria italica Si037343m.g N 0.756