Cla001400 (Citrullus lanatus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cla001400 T133922_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.764 0.652
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.764 0.652
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.761 0.696
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.761 0.674
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.760 0.674
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.760 0.674
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.760 0.674
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.756 0.652
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.756 0.652
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla001400 C2H2 ZF 178 200
Cla001400 C2H2 ZF 215 237

Links

Other C2H2 ZF family TFs
Other Citrullus lanatus TFs

148 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30147.m014242 Ricinus communis 30147.m014242 I 0.815
POPTR_0001s00800 Populus trichocarpa POPTR_0001s00800 I 0.810
cassava21316.m1 Manihot esculenta cassava21316.m1 I 0.809
SapurV1A.1944s0060 Salix purpurea SapurV1A.1944s0060 I 0.809
SapurV1A.1544s0070 Salix purpurea SapurV1A.1544s0070 I 0.809
Ciclev10007101m.g Citrus clementina Ciclev10007101m.g I 0.805
cassava32957.m1 Manihot esculenta cassava32957.m1 I 0.794
Lus10038929.g Linum usitatissimum Lus10038929.g N 0.790
Bostr.26675s0176 Boechera stricta Bostr.26675s0176 I 0.789
Bra018817 Brassica rapa Bra018817 I 0.788
Gorai.005G232300 Gossypium raimondii Gorai.005G232300 I 0.788
Thhalv10005323m.g Eutrema salsugineum Thhalv10005323m.g N 0.782
Bra012914 Brassica rapa Bra012914 I 0.780
Bra029985 Brassica rapa Bra029985 I 0.780
Bo1g081350 Brassica oleracea Bo1g081350 I 0.780
Thhalv10010909m.g Eutrema salsugineum Thhalv10010909m.g I 0.780
cassava47027.m1 Manihot esculenta cassava47027.m1 N 0.769
SapurV1A.0248s0230 Salix purpurea SapurV1A.0248s0230 I 0.767
AMTR_s00137p00104280 Amborella trichopoda AMTR_s00137p00104280 I 0.766
Bostr.15697s0099 Boechera stricta Bostr.15697s0099 I 0.766
30170.m013751 Ricinus communis 30170.m013751 I 0.766
Bo7g048650 Brassica oleracea Bo7g048650 I 0.766
TCM_000780 Theobroma cacao TCM_000780 I 0.766
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.766
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.765
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.765
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I 0.765
cassava12475.valid.m1 Manihot esculenta cassava12475.valid.m1 I 0.765
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.764
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.764
Bostr.2128s0015 Boechera stricta Bostr.2128s0015 I 0.764
Bostr.3148s0159 Boechera stricta Bostr.3148s0159 I 0.764
Ca_18364 Cicer arietinum Ca_18364 I 0.764
Cucsa.352740 Cucumis sativus Cucsa.352740 I 0.764
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.764
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.764
cassava43667.valid.m1 Manihot esculenta cassava43667.valid.m1 I 0.764
28152.m000908 Ricinus communis 28152.m000908 I 0.764
Pm021284 Prunus mume Pm021284 I 0.764
Pm005390 Prunus mume Pm005390 I 0.764
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.764
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I 0.764
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.764
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I 0.764
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.764
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.764
Thhalv10014546m.g Eutrema salsugineum Thhalv10014546m.g I 0.764
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.764
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.764
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.764
chr1.LjT45O14.140.nd Lotus japonicus chr1.LjT45O14.140.nd I 0.764
chr1.CM0050.50.nc Lotus japonicus chr1.CM0050.50.nc I 0.764
PK10188.1 Cannabis sativa PK10188.1 I 0.764
MDP0000762756 Malus domestica MDP0000762756 I 0.764
MDP0000573176 Malus domestica MDP0000573176 I 0.764
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.764
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.764
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.764
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.764
Carubv10001868m.g Capsella rubella Carubv10001868m.g I 0.764
TCM_034720 Theobroma cacao TCM_034720 I 0.764
Gorai.002G132600 Gossypium raimondii Gorai.002G132600 I 0.764
MDP0000198015 Malus domestica MDP0000198015 I 0.764
MDP0000319225 Malus domestica MDP0000319225 I 0.764
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.764
Gorai.010G025200 Gossypium raimondii Gorai.010G025200 I 0.764
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.764
Cagra.9217s0012 Capsella grandiflora Cagra.9217s0012 I 0.764
Ca_01586 Cicer arietinum Ca_01586 I 0.764
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.764
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.764
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.764
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.764
AZF3 Arabidopsis thaliana AT5G43170 I 0.764
ZAT6 Arabidopsis thaliana AT5G04340 D 0.764
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.764
TCM_007214 Theobroma cacao TCM_007214 I 0.764
Bo1g113530 Brassica oleracea Bo1g113530 I 0.764
Bo7g065200 Brassica oleracea Bo7g065200 I 0.764
Bra009464 Brassica rapa Bra009464 I 0.764
Bo9g181170 Brassica oleracea Bo9g181170 I 0.764
Bra022436 Brassica rapa Bra022436 I 0.764
Bo5g113850 Brassica oleracea Bo5g113850 I 0.764
Bra038219 Brassica rapa Bra038219 I 0.764
Bra033666 Brassica rapa Bra033666 I 0.764
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.764
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.764
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.764
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.764
PRUPE_ppa011060mg Prunus persica PRUPE_ppa011060mg I 0.764
C2H2 Arabidopsis lyrata scaffold_600374.1 I 0.764
AZF3 Arabidopsis lyrata scaffold_800768.1 I 0.764
PGSC0003DMG400034322 Solanum tuberosum PGSC0003DMG400034322 I 0.764
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I 0.764
PGSC0003DMG400011548 Solanum tuberosum PGSC0003DMG400011548 I 0.764
AZF2 Arabidopsis thaliana AT3G19580 D 0.764
Bo4g195370 Brassica oleracea Bo4g195370 I 0.761
Bra040325 Brassica rapa Bra040325 I 0.761
Bo3g037560 Brassica oleracea Bo3g037560 I 0.761
evm.TU.supercontig_6.32 Carica papaya evm.TU.supercontig_6.32 I 0.761
Ca_23672 Cicer arietinum Ca_23672 I 0.761
Gorai.001G175400 Gossypium raimondii Gorai.001G175400 I 0.761
scaffold_503291.1 Arabidopsis lyrata scaffold_503291.1 I 0.761
VIT_15s0021g02720 Vitis vinifera VIT_15s0021g02720 I 0.761
Bra000372 Brassica rapa Bra000372 I 0.761
ZAT9 Arabidopsis thaliana AT3G60580 D 0.761
Bostr.13158s0058 Boechera stricta Bostr.13158s0058 I 0.761
Lus10009278.g Linum usitatissimum Lus10009278.g I 0.761
Lus10015888.g Linum usitatissimum Lus10015888.g I 0.761
Bostr.25993s0262 Boechera stricta Bostr.25993s0262 I 0.761
evm.TU.supercontig_2070.1 Carica papaya evm.TU.supercontig_2070.1 I 0.761
POPTR_0002s14460 Populus trichocarpa POPTR_0002s14460 I 0.761
GLYMA03G03950 Glycine max GLYMA03G03950 I 0.761
GLYMA01G32981 Glycine max GLYMA01G32981 I 0.761
orange1.1g044606m.g Citrus sinensis orange1.1g044606m.g I 0.761
Cagra.6011s0004 Capsella grandiflora Cagra.6011s0004 I 0.761
ZAT4 Arabidopsis thaliana AT2G45120 D 0.761
Cagra.0239s0063 Capsella grandiflora Cagra.0239s0063 I 0.761
Thhalv10001538m.g Eutrema salsugineum Thhalv10001538m.g I 0.761
Carubv10017660m.g Capsella rubella Carubv10017660m.g I 0.761
Ciclev10020499m.g Citrus clementina Ciclev10020499m.g I 0.761
MTR_4g027440 Medicago truncatula MTR_4g027440 I 0.761
Carubv10023569m.g Capsella rubella Carubv10023569m.g I 0.761
fgenesh2_kg.4__2705__AT2G45120.1 Arabidopsis lyrata fgenesh2_kg.4__2705__AT2G45120.1 I 0.761
MTR_0160s0030 Medicago truncatula MTR_0160s0030 I 0.761
GLYMA01G18606 Glycine max GLYMA01G18606 I 0.761
ZAT10 Arabidopsis thaliana AT1G27730 D 0.760
SapurV1A.0033s0440 Salix purpurea SapurV1A.0033s0440 I 0.760
Bo3g142840 Brassica oleracea Bo3g142840 I 0.760
STZ Arabidopsis lyrata fgenesh2_kg.1__2932__AT1G27730.1 I 0.760
mgf006006m Mimulus guttatus mgf006006m I 0.760
Solyc12g088390.1 Solanum lycopersicum Solyc12g088390.1 I 0.760
Gorai.004G164000 Gossypium raimondii Gorai.004G164000 I 0.760
evm.TU.supercontig_111.55 Carica papaya evm.TU.supercontig_111.55 N 0.760
Bra010922 Brassica rapa Bra010922 I 0.760
PGSC0003DMG400028275 Solanum tuberosum PGSC0003DMG400028275 I 0.759
PGSC0003DMG400002383 Solanum tuberosum PGSC0003DMG400002383 I 0.759
PGSC0003DMG400041467 Solanum tuberosum PGSC0003DMG400041467 I 0.759
fgenesh1_pm.C_scaffold_1003183 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1003183 I 0.759
Bo7g098740 Brassica oleracea Bo7g098740 N 0.758
Bra012953 Brassica rapa Bra012953 N 0.758
GSMUA_Achr2G13410_001 Musa acuminata GSMUA_Achr2G13410_001 I 0.756
Eucgr.K00165 Eucalyptus grandis Eucgr.K00165 I 0.756
Bra037845 Brassica rapa Bra037845 I 0.756
Bo9g019120 Brassica oleracea Bo9g019120 I 0.756
Bo2g168030 Brassica oleracea Bo2g168030 I 0.756
Bra031834 Brassica rapa Bra031834 I 0.756
AZF1 Arabidopsis thaliana AT5G67450 D 0.756