AT5G61470 (Arabidopsis thaliana)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 AT5G61470 T080889_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Transcription regulator acting as repressor of auxin-inducible gene expression. Auxin-inducible AUX/IAA gene. Short-lived nuclear protein with four conserved domains. Domain III has homology to beta alpha alpha dimerization and DNA binding domains. Involved in auxin signaling. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G61470.1 C2H2 ZF 228 250
AT5G61470.1 C2H2 ZF 274 296

Links

Other C2H2 ZF family TFs
Other Arabidopsis thaliana TFs

14 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bostr.26833s0090 Boechera stricta Bostr.26833s0090 N 0.788
Bo7g098740 Brassica oleracea Bo7g098740 N 0.782
Bra012953 Brassica rapa Bra012953 N 0.782
Bo8g095300 Brassica oleracea Bo8g095300 I 0.774
Bo6g077190 Brassica oleracea Bo6g077190 I 0.774
Thhalv10006508m.g Eutrema salsugineum Thhalv10006508m.g I 0.774
Bra014483 Brassica rapa Bra014483 I 0.774
Bo4g104940 Brassica oleracea Bo4g104940 I 0.774
Bra003422 Brassica rapa Bra003422 I 0.774
Bra007545 Brassica rapa Bra007545 I 0.774
Thhalv10005323m.g Eutrema salsugineum Thhalv10005323m.g N 0.765
BRADI1G14750 Brachypodium distachyon BRADI1G14750 I 0.759
Cagra.0542s0042 Capsella grandiflora Cagra.0542s0042 N 0.758
Carubv10028614m.g Capsella rubella Carubv10028614m.g N 0.758