CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.0542s0042
(
Capsella grandiflora
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Cagra.0542s0042
T142628_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.0542s0042.1.p
C2H2 ZF
213
235
YMCDICGKVLRSHQALGGHRTSH
Cagra.0542s0042.1.p
C2H2 ZF
255
277
YECQICNRVFESGQALGGHKKVH
Links
Other
C2H2 ZF
family TFs
Other
Capsella grandiflora
TFs
3 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Carubv10028614m.g
Capsella rubella
Carubv10028614m.g
N
0.827
Bostr.26833s0090
Boechera stricta
Bostr.26833s0090
N
0.797
AT5G61470
Arabidopsis thaliana
AT5G61470
N
0.758