CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Si010615m.g
(
Setaria italica
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
Si010615m.g
T128661_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZAT1
M01167_2.00
Arabidopsis thaliana
NHRCTNN
NNAGYDN
PBM
Lambert et al.(2019)
pTH10246
0.809
0.778
ZAT4
M01168_2.00
Arabidopsis thaliana
NNHRSTN
NASYDNN
PBM
Lambert et al.(2019)
pTH11142
0.786
0.800
ZAT9
M06817_2.00
Arabidopsis thaliana
YTACTWHH
DDWAGTAR
Dap-seq
OMalley et al.(2016)
At3g60580_col_a
0.786
0.800
AZF2
M01854_2.00
Arabidopsis thaliana
NASTRNN
NNYASTN
PBM
Weirauch et al.(2014)
pTH8258
0.769
0.689
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Si010615m
C2H2 ZF
178
199
YECPACKKVFRSYQALGGHRAS
Si010615m
C2H2 ZF
241
263
HECPYCFRLFPSGQALGGHKRSH
Links
Other
C2H2 ZF
family TFs
Other
Setaria italica
TFs
258 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
F775_02130
Aegilops tauschii
F775_02130
N
0.000
BRADI3G38360
Brachypodium distachyon
BRADI3G38360
N
0.000
BRADI4G32470
Brachypodium distachyon
BRADI4G32470
N
0.000
Eucgr.F02138
Eucalyptus grandis
Eucgr.F02138
N
0.000
MLOC_70640
Hordeum vulgare
MLOC_70640
N
0.000
MLOC_2366
Hordeum vulgare
MLOC_2366
N
0.000
LPERR08G15030
Leersia perrieri
LPERR08G15030
N
0.000
LPERR01G07000
Leersia perrieri
LPERR01G07000
I
0.000
MDP0000562627
Malus domestica
MDP0000562627
N
0.000
mgf022146m
Mimulus guttatus
mgf022146m
N
0.000
GSMUA_Achr9G15140_001
Musa acuminata
GSMUA_Achr9G15140_001
N
0.000
GSMUA_Achr3G06780_001
Musa acuminata
GSMUA_Achr3G06780_001
N
0.000
OBART09G13210
Oryza barthii
OBART09G13210
N
0.000
OB08G25230
Oryza brachyantha
OB08G25230
N
0.000
ORGLA08G0157100
Oryza glaberrima
ORGLA08G0157100
N
0.000
OGLUM09G13640
Oryza glumaepatula
OGLUM09G13640
N
0.000
OGLUM08G19000
Oryza glumaepatula
OGLUM08G19000
N
0.000
BGIOSGA030928
Oryza indica
BGIOSGA030928
N
0.000
BGIOSGA028855
Oryza indica
BGIOSGA028855
N
0.000
OMERI09G10230
Oryza meridionalis
OMERI09G10230
N
0.000
OMERI06G24090
Oryza meridionalis
OMERI06G24090
I
0.000
ONIVA09G13640
Oryza nivara
ONIVA09G13640
N
0.000
ONIVA08G20180
Oryza nivara
ONIVA08G20180
N
0.000
OPUNC08G16020
Oryza punctata
OPUNC08G16020
N
0.000
OPUNC09G11520
Oryza punctata
OPUNC09G11520
I
0.000
ORUFI08G20260
Oryza rufipogon
ORUFI08G20260
N
0.000
ORUFI09G14130
Oryza rufipogon
ORUFI09G14130
N
0.000
OS08G0477900
Oryza sativa
OS08G0477900
N
0.000
Pavir.J25149
Panicum virgatum
Pavir.J25149
N
0.000
Pavir.Ba01985
Panicum virgatum
Pavir.Ba01985
N
0.000
Pavir.Fa00651
Panicum virgatum
Pavir.Fa00651
N
0.000
Pavir.J16121
Panicum virgatum
Pavir.J16121
N
0.000
29908.m006255
Ricinus communis
29908.m006255
N
0.000
Si033077m.g
Setaria italica
Si033077m.g
N
0.000
Si014356m.g
Setaria italica
Si014356m.g
N
0.000
Solyc02g076920.2
Solanum lycopersicum
Solyc02g076920.2
I
0.000
PGSC0003DMG400010208
Solanum tuberosum
PGSC0003DMG400010208
I
0.000
Sb02g026920
Sorghum bicolor
Sb02g026920
N
0.000
Sb07g023280
Sorghum bicolor
Sb07g023280
N
0.000
Traes_5BL_553BE31FE
Triticum aestivum
Traes_5BL_553BE31FE
N
0.000
Traes_2BL_649181D92
Triticum aestivum
Traes_2BL_649181D92
N
0.000
Traes_2AL_7A37B5232
Triticum aestivum
Traes_2AL_7A37B5232
N
0.000
Traes_2DL_5F0BD9D6F
Triticum aestivum
Traes_2DL_5F0BD9D6F
N
0.000
TRIUR3_09991
Triticum urartu
TRIUR3_09991
N
0.000
GRMZM2G113257
Zea mays
GRMZM2G113257
N
0.000
GRMZM2G145146
Zea mays
GRMZM2G145146
N
0.000