pat-9 (Caenorhabditis elegans)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 WBGene00003933 T131568_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in regulation of striated muscle cell differentiation. Located in nucleus. Is expressed in body wall musculature and gonad. [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
pat-9
M00620_2.00		 Caenorhabditis elegans
NDKTKTAAHN
NDTTAMAMHN		 PBM
Narasimhan et al.(2015)
pTH10808		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.755 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00620_2.00 C2H2 ZF 51 73
M00620_2.00 C2H2 ZF 79 101

DNA Binding Domains

Protein ID Domain From To Sequence
T27B1.2 C2H2 ZF 84 106
T27B1.2 C2H2 ZF 112 134

Links

Other C2H2 ZF family TFs
Other Caenorhabditis elegans TFs

30 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CBG16356 Caenorhabditis briggsae CBG16356 I 0.827
CRE27649 Caenorhabditis remanei CRE27649 I 0.827
CJA18352 Caenorhabditis japonica CJA18352 I 0.827
CBN24586 Caenorhabditis brenneri CBN24586 I 0.827
HCOI01651000 Haemonchus contortus HCOI01651000 I 0.821
HPBE_0000071201 Heligmosomoides bakeri HPBE_0000071201 I 0.821
TELCIR_02513 Teladorsagia circumcincta TELCIR_02513 I 0.821
DICVIV_12412 Dictyocaulus viviparus DICVIV_12412 I 0.821
OESDEN_00376 Oesophagostomum dentatum OESDEN_00376 I 0.821
Hba_14230 Heterorhabditis bacteriophora Hba_14230 I 0.821
ANCCAN_18583 Ancylostoma caninum ANCCAN_18583 I 0.821
ANCDUO_07563 Ancylostoma duodenale ANCDUO_07563 I 0.821
ACOC_0000102201 Angiostrongylus costaricensis ACOC_0000102201 I 0.821
RSKR_0001095800 Rhabditophanes kr3021 RSKR_0001095800 I 0.815
Ppa-ztf-19 Pristionchus pacificus PPA23683 I 0.815
scaffold450-EXSNAP2012.3 Pristionchus exspectatus scaffold450-EXSNAP2012.3 I 0.815
BXY_0112400 Bursaphelenchus xylophilus BXY_0112400 I 0.809
SSTP_0001017800 Strongyloides stercoralis SSTP_0001017800 I 0.796
PTRK_0000759200 Parastrongyloides trichosuri PTRK_0000759200 I 0.796
SVE_0378000 Strongyloides venezuelensis SVE_0378000 I 0.796
SPAL_0001716000 Strongyloides papillosus SPAL_0001716000 I 0.796
genemark-nMf.1.1.scaf00221-processed-gene-0.5 Meloidogyne floridensis genemark-nMf.1.1.scaf00221-processed-gene-0.5 I 0.791
MhA1_Contig1798.frz3.fgene1 Meloidogyne hapla MhA1_Contig1798.frz3.fgene1 I 0.791
TCLT_0000966901 Thelazia callipaeda TCLT_0000966901 I 0.786
nOo.2.0.1.g07915 Onchocerca ochengi nOo.2.0.1.g07915 I 0.786
EVEC_0000241401 Enterobius vermicularis EVEC_0000241401 I 0.786
nLs.2.1.2.g04320 Litomosoides sigmodontis nLs.2.1.2.g04320 I 0.786
WBGene00238928 Onchocerca volvulus WBGene00238928 I 0.786
GPLIN_000449900 Globodera pallida GPLIN_000449900 I 0.785
SMUV_0001033801 Syphacia muris SMUV_0001033801 I 0.781