CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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RPN4
(
Saccharomyces cerevisiae
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
YDL020C
T131824_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II; positive regulation of transcription from RNA polymerase II promoter in response to arsenic-containing substance; and regulation of DNA repair. Located in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RPN4
M00017_2.00
Saccharomyces cerevisiae
NNCGCCACCN
NGGTGGCGNN
PBM
Badis et al.(2008)
RPN4_2137
(Direct)
(Direct)
RPN4
M01525_2.00
Saccharomyces cerevisiae
NWWWWWWWWN
NWWWWWWWWN
PBM
Zhu et al.(2009)
Rpn4
(Direct)
(Direct)
RPN4
M07447_2.00
Saccharomyces cerevisiae
CGCCACY
RGTGGCG
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0373.1
(Direct)
(Direct)
RPN4
M08511_2.00
Saccharomyces cerevisiae
NNNRGTGGCRAM
KTYGCCACYNNN
Misc
DeBoer et al.(2011)
YDL020C_1700
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.755
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00017_2.00
C2H2 ZF
26
44
CGAQFSRSYDLTRHQNTIH
M00017_2.00
C2H2 ZF
51
83
FRCSECIKILGSEGYQKTFSRLDALTRHIKSKH
M01525_2.00
C2H2 ZF
450
468
CGAQFSRSYDLTRHQNTIH
M01525_2.00
C2H2 ZF
475
507
FRCSECIKILGSEGYQKTFSRLDALTRHIKSKH
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
YDL020C
C2H2 ZF
450
468
CGAQFSRSYDLTRHQNTIH
YDL020C
C2H2 ZF
475
507
FRCSECIKILGSEGYQKTFSRLDALTRHIKSKH
Links
Other
C2H2 ZF
family TFs
Other
Saccharomyces cerevisiae
TFs
15 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy