RPN4 (Saccharomyces cerevisiae)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 YDL020C T131824_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II; positive regulation of transcription from RNA polymerase II promoter in response to arsenic-containing substance; and regulation of DNA repair. Located in nucleus. [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RPN4
M00017_2.00		 Saccharomyces cerevisiae
NNCGCCACCN
NGGTGGCGNN		 PBM
Badis et al.(2008)
RPN4_2137		 (Direct) (Direct)
RPN4
M01525_2.00		 Saccharomyces cerevisiae
NWWWWWWWWN
NWWWWWWWWN		 PBM
Zhu et al.(2009)
Rpn4		 (Direct) (Direct)
RPN4
M07447_2.00		 Saccharomyces cerevisiae
CGCCACY
RGTGGCG		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0373.1		 (Direct) (Direct)
RPN4
M08511_2.00		 Saccharomyces cerevisiae
NNNRGTGGCRAM
KTYGCCACYNNN		 Misc
DeBoer et al.(2011)
YDL020C_1700		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.755 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00017_2.00 C2H2 ZF 26 44
M00017_2.00 C2H2 ZF 51 83
M01525_2.00 C2H2 ZF 450 468
M01525_2.00 C2H2 ZF 475 507

DNA Binding Domains

Protein ID Domain From To Sequence
YDL020C C2H2 ZF 450 468
YDL020C C2H2 ZF 475 507

Links

Other C2H2 ZF family TFs
Other Saccharomyces cerevisiae TFs

Invalid Input OrderBy

15 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action