CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Alligator_sinensis_CCG001805.1
(
Alligator sinensis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Alligator_sinensis_CCG001805.1
T132993_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Zbtb7b
M00135_2.00
Mus musculus
NKMCCCCNNN
NNNGGGGKMN
PBM
Badis et al.(2009)
Zbtb7b_1054
0.810
0.945
ZBTB7B
M02895_2.00
Homo sapiens
DCGACCMCCVAN
NTBGGKGGTCGH
SELEX
Jolma et al.(2013)
ZBTB7B_1
0.810
0.945
ZBTB7B
M04497_2.00
Homo sapiens
DCGACCACCN
NGGTGGTCGH
SELEX
Yin et al.(2017)
ZBTB7B_eDBD_HT-SELEX
0.810
0.945
ZBTB7B
M10233_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CKROX_Q2
0.810
0.945
ZBTB7B
M04498_2.00
Homo sapiens
DCGMCCACCN
NGGTGGKCGH
SELEX
Yin et al.(2017)
ZBTB7B_eDBD_Methyl-HT-SELEX
0.810
0.945
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Alligator_sinensis_CCG001805.1
C2H2 ZF
459
481
QECPVCHKVIHGAGKLPRHMRTH
Alligator_sinensis_CCG001805.1
C2H2 ZF
487
509
FACEVCGVRFTRNDKLKIHMRKH
Alligator_sinensis_CCG001805.1
C2H2 ZF
515
537
YSCPHCSARFLHSYDLKNHLHLH
Alligator_sinensis_CCG001805.1
C2H2 ZF
543
564
YECYLCHKAFAKDDHLQRHLKG
Links
Other
C2H2 ZF
family TFs
Other
Alligator sinensis
TFs
41 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Ogr06268
Ophisaurus gracilis
Ogr06268
I
0.825
ENSFALG00000001273
Ficedula albicollis
ENSFALG00000001273
I
0.822
ZBTB7B
Oryctolagus cuniculus
ENSOCUG00000021279
I
0.810
ZBTB7B
Otolemur garnettii
ENSOGAG00000030533
I
0.810
ENSNLEG00000011581
Nomascus leucogenys
ENSNLEG00000011581
I
0.810
Zbtb7b
Mus musculus
ENSMUSG00000028042
D
0.810
ZBTB7B
Monodelphis domestica
ENSMODG00000017127
I
0.810
ENSAMEG00000011465
Ailuropoda melanoleuca
ENSAMEG00000011465
I
0.810
ENSPANG00000011709
Papio anubis
ENSPANG00000011709
I
0.810
ENSPPYG00000000765
Pongo abelii
ENSPPYG00000000765
I
0.810
ENSP00000406286
Macaca fascicularis
ENSP00000406286
I
0.810
Myotis_brandtii_ZBTB7B_10031940
Myotis brandtii
Myotis_brandtii_ZBTB7B_10031940
I
0.810
ENSSTOG00000020089
Ictidomys tridecemlineatus
ENSSTOG00000020089
I
0.810
ENSSHAG00000005160
Sarcophilus harrisii
ENSSHAG00000005160
I
0.810
ZBTB7B
Pan troglodytes
ENSPTRG00000001401
I
0.810
Zbtb7b
Rattus norvegicus
ENSRNOG00000020640
I
0.810
ZBTB7B
Macaca mulatta
ENSMMUG00000004053
I
0.810
ENSMPUG00000006162
Mustela putorius furo
ENSMPUG00000006162
I
0.810
ENSDORG00000003720
Dipodomys ordii
ENSDORG00000003720
I
0.810
ZBTB7B
Equus caballus
ENSECAG00000022507
I
0.810
ENSCSAG00000001980
Chlorocebus sabaeus
ENSCSAG00000001980
I
0.810
ZBTB7B
Callithrix jacchus
ENSCJAG00000009307
I
0.810
ZBTB7B
Canis familiaris
ENSCAFG00000017124
I
0.810
ENSFCAG00000028179
Felis catus
ENSFCAG00000028179
I
0.810
ZBTB7B
Dasypus novemcinctus
ENSDNOG00000043591
I
0.810
ZBTB7B
Gorilla gorilla
ENSGGOG00000013438
I
0.810
ZBTB7B
Homo sapiens
ENSG00000160685
D
0.810
ZBTB7B
Bos taurus
ENSBTAG00000021512
I
0.807
ZBTB7B
Tursiops truncatus
ENSTTRG00000016171
I
0.807
ENSP00000406286-D1
Bos grunniens
ENSP00000406286-D1
I
0.807
ENSOARG00000003333
Ovis aries
ENSOARG00000003333
I
0.807
ZBTB7B
Cavia porcellus
ENSCPOG00000019491
I
0.798
ENSLACG00000014174
Latimeria chalumnae
ENSLACG00000014174
I
0.798
zbtb7b
Oryzias latipes
ENSORLG00000010678
I
0.762
zbtb7b
Gasterosteus aculeatus
ENSGACG00000011635
I
0.762
ENSPFOG00000005859
Poecilia formosa
ENSPFOG00000005859
I
0.760
ENSXMAG00000012652
Xiphophorus maculatus
ENSXMAG00000012652
I
0.760
zbtb7b
Tetraodon nigroviridis
ENSTNIG00000008071
I
0.760
ENSAMXG00000011607
Astyanax mexicanus
ENSAMXG00000011607
I
0.759
ENSGMOG00000005810
Gadus morhua
ENSGMOG00000005810
I
0.759
zbtb7b
Danio rerio
ENSDARG00000021891
I
0.759