Alligator_sinensis_CCG001805.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG001805.1 T132993_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Zbtb7b
M00135_2.00 		Mus musculus
NKMCCCCNNN
NNNGGGGKMN		 PBM
Badis et al.(2009)
Zbtb7b_1054 		0.810 0.945
ZBTB7B
M02895_2.00 		Homo sapiens
DCGACCMCCVAN
NTBGGKGGTCGH		 SELEX
Jolma et al.(2013)
ZBTB7B_1 		0.810 0.945
ZBTB7B
M04497_2.00 		Homo sapiens
DCGACCACCN
NGGTGGTCGH		 SELEX
Yin et al.(2017)
ZBTB7B_eDBD_HT-SELEX 		0.810 0.945
ZBTB7B
M10233_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CKROX_Q2 		0.810 0.945
ZBTB7B
M04498_2.00 		Homo sapiens
DCGMCCACCN
NGGTGGKCGH		 SELEX
Yin et al.(2017)
ZBTB7B_eDBD_Methyl-HT-SELEX 		0.810 0.945
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG001805.1 C2H2 ZF 459 481
Alligator_sinensis_CCG001805.1 C2H2 ZF 487 509
Alligator_sinensis_CCG001805.1 C2H2 ZF 515 537
Alligator_sinensis_CCG001805.1 C2H2 ZF 543 564

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

Invalid Input OrderBy

41 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action