CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Alligator_sinensis_CCG014487.1
(
Alligator sinensis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Alligator_sinensis_CCG014487.1
T133322_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Zfp652
M02938_2.00
Mus musculus
DTTAACCCTTTVN
NBAAAGGGTTAAH
SELEX
Jolma et al.(2013)
Zfp652_1
0.822
0.995
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Alligator_sinensis_CCG014487.1
C2H2 ZF
215
238
LTCEKCPRVFNTRWYLEKHMNVTH
Alligator_sinensis_CCG014487.1
C2H2 ZF
243
263
ICDKCGKKFVLESELSLHQQT
Alligator_sinensis_CCG014487.1
C2H2 ZF
269
292
IQCVSCNKSFKKLWSLHEHIKIVH
Alligator_sinensis_CCG014487.1
C2H2 ZF
299
321
FSCEICEKKFYTMAHVRKHMVAH
Alligator_sinensis_CCG014487.1
C2H2 ZF
327
349
FTCETCGKSFKRSMSLKVHSLQH
Alligator_sinensis_CCG014487.1
C2H2 ZF
355
377
FRCENCDERFQYKYQLRSHMSIH
Alligator_sinensis_CCG014487.1
C2H2 ZF
383
405
FMCQWCGKDFNMKQYFDEHMKTH
Alligator_sinensis_CCG014487.1
C2H2 ZF
411
433
FICEICGKSFTSRPNMKRHRRTH
Alligator_sinensis_CCG014487.1
C2H2 ZF
439
460
YPCDVCGQRFRFSNMLKAHKEK
Links
Other
C2H2 ZF
family TFs
Other
Alligator sinensis
TFs
54 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy