Cla022854 (Citrullus lanatus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cla022854 T133972_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
IDD7
M06803_2.00
Arabidopsis thaliana
NDDTTTTGTCKTTTWBYD

HRVWAAAMGACAAAAHHN
Dap-seq
OMalley et al.(2016)
IDD7_col_a
0.821 0.953
IDD4
M06809_2.00
Arabidopsis thaliana
WWTTTTGTCKTTTWSYD

HRSWAAAMGACAAAAWW
Dap-seq
OMalley et al.(2016)
IDD4_col_a
0.821 0.884
MGP
M06795_2.00
Arabidopsis thaliana
HNHDWTTTTGTCKTTTWNYD

HRNWAAAMGACAAAAWHDND
Dap-seq
OMalley et al.(2016)
MGP_col_a
0.821 0.884
MGP
M06796_2.00
Arabidopsis thaliana
NNDTTTTGTCKTTTWBYD

HRVWAAAMGACAAAAHNN
Dap-seq
OMalley et al.(2016)
MGP_colamp_a
0.821 0.884
IDD5
M06807_2.00
Arabidopsis thaliana
DNTTTTGTCKTTTTSYD

HRSAAAAMGACAAAANH
Dap-seq
OMalley et al.(2016)
IDD5_colamp_a
0.816 0.907
IDD5
M06808_2.00
Arabidopsis thaliana
WTTTTGTCKTTTWSYD

HRSWAAAMGACAAAAW
Dap-seq
OMalley et al.(2016)
IDD5_col
0.816 0.907
AT1G14580
M06797_2.00
Arabidopsis thaliana
NNNWWTTTTGTCKTTTWSYD

HRSWAAAMGACAAAAWWNNN
Dap-seq
OMalley et al.(2016)
At1g14580_col_a
0.816 0.860
AT1G14580
M06798_2.00
Arabidopsis thaliana
NNTTTTGTCKTTTWSYD

HRSWAAAMGACAAAANN
Dap-seq
OMalley et al.(2016)
At1g14580_colamp_a
0.816 0.860
NUC
M06822_2.00
Arabidopsis thaliana
NNNNNTTTTGTCKTYTWBYD

HRVWARAMGACAAAANNNNN
Dap-seq
OMalley et al.(2016)
NUC_col_a
0.797 0.860
NUC
M06823_2.00
Arabidopsis thaliana
NDTTTTGTCGTYTWNYD

HRNWARACGACAAAAHN
Dap-seq
OMalley et al.(2016)
NUC_colamp_a
0.797 0.860
JKD
M06818_2.00
Arabidopsis thaliana
HHNWWTTTTGTCKTTTWBYD

HRVWAAAMGACAAAAWWNDD
Dap-seq
OMalley et al.(2016)
JKD_col_a
0.791 0.930
IDD1
M06824_2.00
Arabidopsis thaliana
DNTTTTGTCKTTTWBYD

HRVWAAAMGACAAAANH
Dap-seq
OMalley et al.(2016)
At5g66730_colamp_a
0.788 0.907
IDD1
M06825_2.00
Arabidopsis thaliana
WDTTTTGTCKTTTWNYD

HRNWAAAMGACAAAAHW
Dap-seq
OMalley et al.(2016)
At5g66730_col
0.788 0.907
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla022854 C2H2 ZF 138 159
Cla022854 C2H2 ZF 158 184

Links

Other C2H2 ZF family TFs
Other Citrullus lanatus TFs

632 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PGUG_05832 Candida guilliermondii PGUG_05832 I 0.000
ZBAI_02843 Zygosaccharomyces bailii ZBAI_02843 I 0.000
ZBAI_09101 Zygosaccharomyces bailii ZBAI_09101 I 0.000
PGUG_05832 Meyerozyma guilliermondii PGUG_05832 I 0.000
JL09_g3982 Pichia kudriavzevii JL09_g3982 N 0.000
FFUJ_12947 Fusarium fujikuroi FFUJ_12947 N 0.000
Z518_00888 Rhinocladiella mackenziei Z518_00888 N 0.000
Z517_09549 Fonsecaea pedrosoi Z517_09549 N 0.000
UM02765 Ustilago maydis UM02765 N 0.000
sr13818 Sporisorium reilianum sr13818 N 0.000
S40285_05647 Stachybotrys chlorohalonata S40285_05647 N 0.000
PVAR5_1869 Byssochlamys spectabilis PVAR5_1869 N 0.000
GNLVRS01_PISO0I18070g Millerozyma farinosa GNLVRS01_PISO0I18070g N 0.000
PSEUBRA_SCAF5g02278 Pseudozyma brasiliensis PSEUBRA_SCAF5g02278 N 0.000
PHSY_000986 Pseudozyma hubeiensis PHSY_000986 N 0.000
GNLVRS01_PISO0J19831g Millerozyma farinosa GNLVRS01_PISO0J19831g N 0.000
PV10_03721 Exophiala mesophila PV10_03721 N 0.000