CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pvit_03702
(
Pogona vitticeps
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Pvit_03702
T136993_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PATZ1
M08287_2.00
Homo sapiens
CCCCDCCC
GGGHGGGG
ChIP-seq
Schmitges et al.(2016)
Q9HBE1.MEME
0.825
0.993
PATZ1
M08864_2.00
Homo sapiens
NYBCHNBYBCMKYCYCYBCCMY
RKGGVRGRGRMKGVRVNDGVRN
Misc
Kulakovskiy et al.(2013)
PATZ1_HUMAN.H11MO.0.C
0.825
0.993
PATZ1
M10137_2.00
Homo sapiens
NDDCCCCCCCCSH
DSGGGGGGGGHHN
Transfac
Matys et al.(2006)
V$MAZR_01
0.825
0.993
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pvit_03702
C2H2 ZF
145
167
LPCGLCGKVFTDANRLRQHEAQH
Pvit_03702
C2H2 ZF
209
230
ACEICGKIFRDVYHLNRHKLSH
Pvit_03702
C2H2 ZF
236
258
YSCPVCGLRFKRKDRMSYHVRSH
Pvit_03702
C2H2 ZF
266
289
YICQSCGKGFSRPDHLNGHIKQVH
Pvit_03702
C2H2 ZF
295
317
HKCQTCNASFATRDRLRSHLACH
Pvit_03702
C2H2 ZF
349
371
FCTICNRGFSSASYLKVHVKTHH
Links
Other
C2H2 ZF
family TFs
Other
Pogona vitticeps
TFs
36 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy