CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Tal_R008892
(
Tyto alba
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Tal_R008892
T137669_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PATZ1
M08287_2.00
Homo sapiens
CCCCDCCC
GGGHGGGG
ChIP-seq
Schmitges et al.(2016)
Q9HBE1.MEME
0.825
0.993
PATZ1
M08864_2.00
Homo sapiens
NYBCHNBYBCMKYCYCYBCCMY
RKGGVRGRGRMKGVRVNDGVRN
Misc
Kulakovskiy et al.(2013)
PATZ1_HUMAN.H11MO.0.C
0.825
0.993
PATZ1
M10137_2.00
Homo sapiens
NDDCCCCCCCCSH
DSGGGGGGGGHHN
Transfac
Matys et al.(2006)
V$MAZR_01
0.825
0.993
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Tal_R008892
C2H2 ZF
148
170
LPCGLCGKVFTDANRLRQHEAQH
Tal_R008892
C2H2 ZF
212
233
ACEICGKIFRDVYHLNRHKLSH
Tal_R008892
C2H2 ZF
239
261
YSCPVCGLRFKRKDRMSYHVRSH
Tal_R008892
C2H2 ZF
269
292
YICQSCGKGFSRPDHLNGHIKQVH
Tal_R008892
C2H2 ZF
298
320
HKCQTCNASFATRDRLRSHLACH
Tal_R008892
C2H2 ZF
352
374
FCTICNRGFSSASYLKVHVKTHH
Links
Other
C2H2 ZF
family TFs
Other
Tyto alba
TFs
36 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy