CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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estExt_fgenesh1_pm.C_sca_1_chr1_3_00042
(
Nectria haematococca
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
estExt_fgenesh1_pm.C_sca_1_chr1_3_00042
T138564_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
csp-1
M01876_2.00
Neurospora crassa
NNDWCCCYDN
NHRGGGWHNN
PBM
Weirauch et al.(2014)
pTH9015
0.798
0.935
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh1_pm.C_sca_1_chr1_3_00042
C2H2 ZF
133
160
YPCRYRDTHGCEKTFTTSGHASRHSKIH
estExt_fgenesh1_pm.C_sca_1_chr1_3_00042
C2H2 ZF
166
190
VQCTFAGCQKKFTRADNMKQHLETH
Links
Other
C2H2 ZF
family TFs
Other
Nectria haematococca
TFs
54 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy