CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh1_pg.sca_18_chr2_1_0000868
(
Nectria haematococca
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
fgenesh1_pg.sca_18_chr2_1_0000868
T139024_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NCU03184
M01474_2.00
Neurospora crassa
NDNNVATCNN
NNGATBNNHN
PBM
Najafabadi et al.(2015a)
pTH10252
0.822
0.978
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh1_pg.sca_18_chr2_1_0000868
C2H2 ZF
244
266
YICPTCNKAFSRPSSLRIHSHSH
fgenesh1_pg.sca_18_chr2_1_0000868
C2H2 ZF
272
297
FKCPHAGCGKAFSVRSNMKRHERGCH
Links
Other
C2H2 ZF
family TFs
Other
Nectria haematococca
TFs
130 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy