CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh1_pg.sca_1_chr1_3_0000912
(
Nectria haematococca
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
fgenesh1_pg.sca_1_chr1_3_0000912
T139028_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SFP1
M01536_2.00
Saccharomyces cerevisiae
WTTTTTTY
RAAAAAAW
PBM
Zhu et al.(2009)
Sfp1
0.777
0.822
SFP1
M08536_2.00
Saccharomyces cerevisiae
NNNNDRAAAAWTTTTYYNBDN
NHVNRRAAAAWTTTTYHNNNN
Misc
DeBoer et al.(2011)
YLR403W_797
0.777
0.822
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh1_pg.sca_1_chr1_3_0000912
C2H2 ZF
554
579
FKCPVIGCEKAYKNQNGLKYHKTHGH
fgenesh1_pg.sca_1_chr1_3_0000912
C2H2 ZF
615
636
FSCETCGKRYKNLNGLKYHKAH
Links
Other
C2H2 ZF
family TFs
Other
Nectria haematococca
TFs
134 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy