CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh2_pg.scaffold_37000202
(
Branchiostoma floridae
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
fgenesh2_pg.scaffold_37000202
T139526_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh2_pg.scaffold_37000202
C2H2 ZF
72
94
HKCPQCGYETDMKSAMTKHLRIH
fgenesh2_pg.scaffold_37000202
C2H2 ZF
129
152
YVCGHCGYATADKYVLLSHVRTIH
fgenesh2_pg.scaffold_37000202
C2H2 ZF
158
181
YQCAICDYSAAKKCNLESHIMAKH
fgenesh2_pg.scaffold_37000202
C2H2 ZF
187
209
HKCTECDFSSVSKKNLKFHMANH
fgenesh2_pg.scaffold_37000202
C2H2 ZF
215
237
YKCKICDYSTIQKQHLKQHMAIH
fgenesh2_pg.scaffold_37000202
C2H2 ZF
243
265
YKCKICDYSAAEQCNLKRHMLKH
fgenesh2_pg.scaffold_37000202
C2H2 ZF
271
293
YKCNKCDYSATQMSHLKLHMSKH
fgenesh2_pg.scaffold_37000202
C2H2 ZF
299
321
YKCDQCDYSAAVKSSLKLHMTTH
fgenesh2_pg.scaffold_37000202
C2H2 ZF
327
349
YKCGLCDYSASQMPHLKLHMVKH
fgenesh2_pg.scaffold_37000202
C2H2 ZF
355
377
FKCHVCDYSTAIKSALRQHMYKH
fgenesh2_pg.scaffold_37000202
C2H2 ZF
383
405
YKCGICAHSATRMSHLKRHMVTH
fgenesh2_pg.scaffold_37000202
C2H2 ZF
411
433
YKCDVCDFAAAEMSDLKQHKFKH
fgenesh2_pg.scaffold_37000202
C2H2 ZF
439
461
YKCELCDYSATRLYNLKRHVERH
Links
Other
C2H2 ZF
family TFs
Other
Branchiostoma floridae
TFs
1 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
e_gw.442.1.1
Branchiostoma floridae
e_gw.442.1.1
N
0.827