CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Sakowv30026316m.g
(
Saccoglossus kowalevskii
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Sakowv30026316m.g
T142361_2.00
JGI:Metazome (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BCL11B
M04453_2.00
Homo sapiens
GTGAACGBNDNNVCTACAC
GTGTAGBNNHNVCGTTCAC
SELEX
Yin et al.(2017)
BCL11B_eDBD_HT-SELEX
0.820
0.930
BCL11B
M04454_2.00
Homo sapiens
GTGAACGBNDNHVCTACAC
GTGTAGBDNHNVCGTTCAC
SELEX
Yin et al.(2017)
BCL11B_eDBD_Methyl-HT-SELEX
0.820
0.930
BCL11A
M07926_2.00
Homo sapiens
BTYTCASTTCCYYHH
DDRRGGAASTGARAV
ChIP-seq
Gerstein et al.(2012)
GM12878_BCL11A_HudsonAlpha
0.803
0.904
BCL11A
M08881_2.00
Homo sapiens
BHBYCABTTCCYBHNYN
NRNDVRGGAAVTGRVDV
Misc
Kulakovskiy et al.(2013)
BC11A_HUMAN.H11MO.0.A
0.803
0.904
BCL11A
M10187_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BCL11A_02
0.803
0.904
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
23915759_peptide
C2H2 ZF
461
482
SCEFCGKVFKFQSNLIVHRRSH
23915759_peptide
C2H2 ZF
488
510
YKCQLCDHACSQASKLKRHMKTH
23915759_peptide
C2H2 ZF
805
827
DTCEFCGKIFKNCSNLTVHRRSH
23915759_peptide
C2H2 ZF
833
855
YKCELCSYACAQSSKLTRHMKTH
23915759_peptide
C2H2 ZF
863
886
FRCEVCSMPFSVYSTLEKHMKKWH
23915760_peptide
C2H2 ZF
460
481
SCEFCGKVFKFQSNLIVHRRSH
23915760_peptide
C2H2 ZF
487
509
YKCQLCDHACSQASKLKRHMKTH
23915760_peptide
C2H2 ZF
804
826
DTCEFCGKIFKNCSNLTVHRRSH
23915760_peptide
C2H2 ZF
832
854
YKCELCSYACAQSSKLTRHMKTH
23915760_peptide
C2H2 ZF
862
885
FRCEVCSMPFSVYSTLEKHMKKWH
23915761_peptide
C2H2 ZF
415
436
SCEFCGKVFKFQSNLIVHRRSH
23915761_peptide
C2H2 ZF
442
464
YKCQLCDHACSQASKLKRHMKTH
23915761_peptide
C2H2 ZF
759
781
DTCEFCGKIFKNCSNLTVHRRSH
23915761_peptide
C2H2 ZF
787
809
YKCELCSYACAQSSKLTRHMKTH
23915761_peptide
C2H2 ZF
817
840
FRCEVCSMPFSVYSTLEKHMKKWH
Links
Other
C2H2 ZF
family TFs
Other
Saccoglossus kowalevskii
TFs
130 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy