CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bostr.10273s0148
(
Boechera stricta
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Bostr.10273s0148
T142566_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bostr.10273s0148.1.p
C2H2 ZF
34
57
YLCQYCGISRSKKYLITSHIQSHH
Bostr.10273s0148.1.p
C2H2 ZF
80
102
HTCQECGAEFKKPAHLKQHMQSH
Bostr.10273s0148.1.p
C2H2 ZF
108
132
FPCYVDDCAASYRRKDHLNRHLLTH
Bostr.10273s0148.1.p
C2H2 ZF
137
162
FKCPMENCKSEFSVQGNVSRHVKKYH
Bostr.10273s0148.1.p
C2H2 ZF
219
243
HVCKEIGCGKAFKYPSQLKKHQDSH
Bostr.10273s0148.1.p
C2H2 ZF
252
276
FCSELGCMKYFTNEECLKAHIRSCH
Bostr.10273s0148.1.p
C2H2 ZF
309
334
FKCEVEGCSSTFSKASNLQKHVKAVH
Links
Other
C2H2 ZF
family TFs
Other
Boechera stricta
TFs
6 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
TFIIIA
Arabidopsis lyrata
fgenesh2_kg.2__1466__AT1G72050.2
N
0.814
Carubv10022259m.g
Capsella rubella
Carubv10022259m.g
N
0.801
Cagra.4006s0023
Capsella grandiflora
Cagra.4006s0023
N
0.801
Bra008004
Brassica rapa
Bra008004
N
0.797
Thhalv10018661m.g
Eutrema salsugineum
Thhalv10018661m.g
N
0.783
Bra003899
Brassica rapa
Bra003899
N
0.773