CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10026299m.g
(
Capsella rubella
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Carubv10026299m.g
T142746_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10026299m
C2H2 ZF
81
103
HICCECGKRFSSGKALGGHKRIH
Carubv10026299m
C2H2 ZF
134
154
CCVCFKKFTSMKALYGHMRFH
Links
Other
C2H2 ZF
family TFs
Other
Capsella rubella
TFs
7 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cagra.3745s0017
Capsella grandiflora
Cagra.3745s0017
N
0.827
Bostr.26833s0643
Boechera stricta
Bostr.26833s0643
N
0.803
AT5G56200
Arabidopsis thaliana
AT5G56200
N
0.803
Bra002836
Brassica rapa
Bra002836
N
0.803
Bo9g123640
Brassica oleracea
Bo9g123640
N
0.803
Thhalv10015446m.g
Eutrema salsugineum
Thhalv10015446m.g
N
0.803
fgenesh2_kg.8__1525__AT5G56200.1
Arabidopsis lyrata
fgenesh2_kg.8__1525__AT5G56200.1
N
0.798