gene02558-v1.0-hybrid (Fragaria vesca)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 gene02558-v1.0-hybrid T142941_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AZF2
M01854_2.00
Arabidopsis thaliana
NASTRNN

NNYASTN
PBM
Weirauch et al.(2014)
pTH8258
0.822 0.913
ZAT6
M00861_2.00
Arabidopsis thaliana
NNHRSTN

NASYDNN
PBM
Franco-Zorrilla et al.(2014)
ZAT6
0.803 0.935
ZAT9
M06817_2.00
Arabidopsis thaliana
YTACTWHH

DDWAGTAR
Dap-seq
OMalley et al.(2016)
At3g60580_col_a
0.799 0.717
ZAT4
M01168_2.00
Arabidopsis thaliana
NNHRSTN

NASYDNN
PBM
Lambert et al.(2019)
pTH11142
0.799 0.696
ZAT10
M01852_2.00
Arabidopsis thaliana
NNHASWN

NWSTDNN
PBM
Weirauch et al.(2014)
pTH7255
0.796 0.870
ZAT10
M06799_2.00
Arabidopsis thaliana
WSHHCACT

AGTGDDSW
Dap-seq
OMalley et al.(2016)
STZ_colamp_a
0.796 0.870
ZAT10
M06800_2.00
Arabidopsis thaliana
YWSHNHCASTN

NASTGDNDSWR
Dap-seq
OMalley et al.(2016)
STZ_col
0.796 0.870
AZF1
M01860_2.00
Arabidopsis thaliana
NWSYDNN

NNHRSWN
PBM
Weirauch et al.(2014)
pTH7163
0.787 0.804
AZF1
M06826_2.00
Arabidopsis thaliana
WCACTVWCWNH

DNWGWBAGTGW
Dap-seq
OMalley et al.(2016)
AZF1_colamp_a
0.787 0.804
ZAT1
M01167_2.00
Arabidopsis thaliana
NHRCTNN

NNAGYDN
PBM
Lambert et al.(2019)
pTH10246
0.776 0.696
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna02558.1-v1.0-hybrid C2H2 ZF 101 123
mrna02558.1-v1.0-hybrid C2H2 ZF 158 180

Links

Other C2H2 ZF family TFs
Other Fragaria vesca TFs

230 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAB39329 Xenopus laevis AAB39329 I 0.000
Aan_R002236 Calypte anna Aan_R002236 I 0.000
Aan_R005610 Calypte anna Aan_R005610 I 0.000
ACEP23519 Atta cephalotes ACEP23519 I 0.000
ACEP23524 Atta cephalotes ACEP23524 I 0.000
Afo_R015053 Aptenodytes forsteri Afo_R015053 I 0.000
Alligator_sinensis_CCG004626.1 Alligator sinensis Alligator_sinensis_CCG004626.1 I 0.000
Brh_R001114 Buceros rhinoceros Brh_R001114 I 0.000
Brh_R001115 Buceros rhinoceros Brh_R001115 I 0.000
CapteG167863 Capitella teleta CapteG167863 I 0.000
CGI_10017370 Crassostrea gigas CGI_10017370 I 0.000
Cmyd_10013581 Chelonia mydas Cmyd_10013581 I 0.000
D918_06928 Trichuris suis D918_06928 I 0.000
DAPPUDRAFT_314805 Daphnia pulex DAPPUDRAFT_314805 I 0.000
SMAD3 Anolis carolinensis ENSACAG00000009914 I 0.000
ENSAMEG00000003318 Ailuropoda melanoleuca ENSAMEG00000003318 I 0.000
ENSAMXG00000002880 Astyanax mexicanus ENSAMXG00000002880 I 0.000
ENSAPLG00000004964 Anas platyrhynchos ENSAPLG00000004964 I 0.000
ENSAPLG00000007006 Anas platyrhynchos ENSAPLG00000007006 I 0.000
ENSAPLG00000011496 Anas platyrhynchos ENSAPLG00000011496 I 0.000
SMAD3 Bos taurus ENSBTAG00000012599 I 0.000
ENSBTAP00000003668-D4 Bos grunniens ENSBTAP00000003668-D4 I 0.000
SMAD3 Canis familiaris ENSCAFG00000017388 I 0.000
SMAD3 Choloepus hoffmanni ENSCHOG00000001562 I 0.000
SMAD3 Callithrix jacchus ENSCJAG00000002088 I 0.000
SMAD3 Cavia porcellus ENSCPOG00000021314 I 0.000
ENSCSAG00000013275 Chlorocebus sabaeus ENSCSAG00000013275 I 0.000
ENSCSAVG00000004749 Ciona savignyi ENSCSAVG00000004749 I 0.000
smad3b Danio rerio ENSDARG00000010207 I 0.000
smad3a Danio rerio ENSDARG00000036096 I 0.000
SMAD3 Dasypus novemcinctus ENSDNOG00000044090 I 0.000
SMAD3 Equus caballus ENSECAG00000020259 I 0.000
SMAD3 Echinops telfairi ENSETEG00000003356 I 0.000
ENSETEG00000017446 Echinops telfairi ENSETEG00000017446 I 0.000
ENSFALG00000012861 Ficedula albicollis ENSFALG00000012861 I 0.000
SMAD3 Felis catus ENSFCAG00000027081 I 0.000
SMAD3 Homo sapiens ENSG00000166949 D 0.000
smad3b Gasterosteus aculeatus ENSGACG00000005092 I 0.000
SMAD3 Gasterosteus aculeatus ENSGACG00000016882 I 0.000
ENSGACG00000017820 Gasterosteus aculeatus ENSGACG00000017820 I 0.000
ENSGALG00000007870 Gallus gallus ENSGALG00000007870 I 0.000
ENSGALG00000014184 Gallus gallus ENSGALG00000014184 I 0.000
ENSGMOG00000001314 Gadus morhua ENSGMOG00000001314 I 0.000
ENSGMOG00000008364 Gadus morhua ENSGMOG00000008364 I 0.000
ENSLACG00000010552 Latimeria chalumnae ENSLACG00000010552 I 0.000
ENSLOCG00000013897 Lepisosteus oculatus ENSLOCG00000013897 I 0.000
ENSMEUG00000016668 Macropus eugenii ENSMEUG00000016668 I 0.000
ENSMGAG00000001351 Meleagris gallopavo ENSMGAG00000001351 I 0.000
SMAD3 Meleagris gallopavo ENSMGAG00000009879 I 0.000
SMAD3 Microcebus murinus ENSMICG00000006119 I 0.000
SMAD2 Microcebus murinus ENSMICG00000007882 I 0.000
SMAD3 Myotis lucifugus ENSMLUG00000002185 I 0.000
SMAD3 Macaca mulatta ENSMMUG00000015455 I 0.000
SMAD3 Monodelphis domestica ENSMODG00000009609 I 0.000
ENSMPUG00000000304 Mustela putorius furo ENSMPUG00000000304 I 0.000
Smad3 Mus musculus ENSMUSG00000032402 D 0.000
ENSNLEG00000012983 Nomascus leucogenys ENSNLEG00000012983 I 0.000
ENSOARG00000018267 Ovis aries ENSOARG00000018267 I 0.000
SMAD3 Otolemur garnettii ENSOGAG00000014217 I 0.000
ENSONIG00000004109 Oreochromis niloticus ENSONIG00000004109 I 0.000
ENSONIG00000013271 Oreochromis niloticus ENSONIG00000013271 I 0.000
ENSONIG00000015464 Oreochromis niloticus ENSONIG00000015464 I 0.000
SMAD3 Ochotona princeps ENSOPRG00000014996 I 0.000
smad3a Oryzias latipes ENSORLG00000002207 I 0.000
smad3b Oryzias latipes ENSORLG00000006803 I 0.000
ENSORLG00000011834 Oryzias latipes ENSORLG00000011834 I 0.000
ENSP00000332973 Macaca fascicularis ENSP00000332973 I 0.000
ENSP00000332973-D1 Bos grunniens ENSP00000332973-D1 I 0.000
ENSPANG00000016627 Papio anubis ENSPANG00000016627 I 0.000
SMAD3 Procavia capensis ENSPCAG00000008103 I 0.000
ENSPFOG00000002285 Poecilia formosa ENSPFOG00000002285 I 0.000
ENSPFOG00000004885 Poecilia formosa ENSPFOG00000004885 I 0.000
ENSPFOG00000006336 Poecilia formosa ENSPFOG00000006336 I 0.000
ENSPFOG00000008802 Poecilia formosa ENSPFOG00000008802 I 0.000
ENSPMAG00000000489 Petromyzon marinus ENSPMAG00000000489 I 0.000
ENSPMAG00000004234 Petromyzon marinus ENSPMAG00000004234 I 0.000
ENSPPYG00000006583 Pongo abelii ENSPPYG00000006583 I 0.000
ENSPSIG00000010579 Pelodiscus sinensis ENSPSIG00000010579 I 0.000
SMAD3 Pan troglodytes ENSPTRG00000007199 I 0.000
SMAD3 Pteropus vampyrus ENSPVAG00000002626 I 0.000
Smad3 Rattus norvegicus ENSRNOG00000008620 I 0.000
SMAD2 Sorex araneus ENSSARG00000003487 I 0.000
ENSSHAG00000012543 Sarcophilus harrisii ENSSHAG00000012543 I 0.000
SMAD3 Sus scrofa ENSSSCG00000004952 I 0.000
ENSSTOG00000003788 Ictidomys tridecemlineatus ENSSTOG00000003788 I 0.000
ENSSTOG00000010286 Ictidomys tridecemlineatus ENSSTOG00000010286 I 0.000
ENSTBEG00000003884 Tupaia belangeri ENSTBEG00000003884 I 0.000
SMAD3 Taeniopygia guttata ENSTGUG00000009470 I 0.000
ENSTNIG00000004827 Tetraodon nigroviridis ENSTNIG00000004827 I 0.000
smad3b Tetraodon nigroviridis ENSTNIG00000008432 I 0.000
smad3a Tetraodon nigroviridis ENSTNIG00000009546 I 0.000
ENSTRUG00000002512 Takifugu rubripes ENSTRUG00000002512 I 0.000
smad3b Takifugu rubripes ENSTRUG00000014802 I 0.000
smad3a Takifugu rubripes ENSTRUG00000016858 I 0.000
ENSXMAG00000002377 Xiphophorus maculatus ENSXMAG00000002377 I 0.000
ENSXMAG00000003553 Xiphophorus maculatus ENSXMAG00000003553 I 0.000
ENSXMAG00000004505 Xiphophorus maculatus ENSXMAG00000004505 I 0.000
estExt_fgenesh2_pg.C_1720042 Branchiostoma floridae estExt_fgenesh2_pg.C_1720042 I 0.000
estExt_gwp.C_540260 Branchiostoma floridae estExt_gwp.C_540260 I 0.000
Gfo_R000026 Geospiza fortis Gfo_R000026 I 0.000
Gfo_R005908 Geospiza fortis Gfo_R005908 I 0.000
Gfo_R012055 Geospiza fortis Gfo_R012055 I 0.000
HelroG185435 Helobdella robusta HelroG185435 I 0.000
ISCW001846 Ixodes scapularis ISCW001846 I 0.000
L798_14024 Zootermopsis nevadensis L798_14024 I 0.000
ML011743a Mnemiopsis leidyi ML011743a I 0.000
Myotis_brandtii_Smad3_10022298 Myotis brandtii Myotis_brandtii_Smad3_10022298 I 0.000
NEMVEDRAFT_v1g168041 Nematostella vectensis NEMVEDRAFT_v1g168041 I 0.000
NEMVEDRAFT_v1g228395 Nematostella vectensis NEMVEDRAFT_v1g228395 I 0.000
NV10880 Nasonia vitripennis NV10880 I 0.000
Ocbimv22036741m.g Octopus bimaculoides Ocbimv22036741m.g I 0.000
PHUM033930 Pediculus humanus PHUM033930 I 0.000
PPAI005080 Phlebotomus papatasi PPAI005080 I 0.000
Pvit_04529 Pogona vitticeps Pvit_04529 I 0.000
Sakowv30001252m.g Saccoglossus kowalevskii Sakowv30001252m.g I 0.000
Sakowv30032201m.g Saccoglossus kowalevskii Sakowv30032201m.g I 0.000
SINV22799 Solenopsis invicta SINV22799 I 0.000
SMAR008230 Strigamia maritima SMAR008230 I 0.000
SPU_017642 Strongylocentrotus purpuratus SPU_017642 I 0.000
Tal_R000062 Tyto alba Tal_R000062 I 0.000
Tal_R001210 Tyto alba Tal_R001210 I 0.000
Tal_R011237 Tyto alba Tal_R011237 I 0.000
TriadG49742 Trichoplax adhaerens TriadG49742 I 0.000
TriadG50301 Trichoplax adhaerens TriadG50301 I 0.000
TTRE_0000645601 Trichuris trichiura TTRE_0000645601 I 0.000
smad3 Xenopus tropicalis XB-GENE-481992 I 0.000
smad3.L Xenopus laevis XB-GENE-864816 I 0.000
smad2.S Xenopus laevis XB-GENE-864923 I 0.000
XP_002157279.1 Hydra magnipapillata XP_002157279.1 I 0.000