CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Sjc_0029840
(
Schistosoma japonicum
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Sjc_0029840
T145014_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
egrh-1
M00622_2.00
Caenorhabditis elegans
CSCCCMCR
YGKGGGSG
PBM
Narasimhan et al.(2015)
pTH9317
0.780
0.768
sr
M06072_2.00
Drosophila melanogaster
HVMCGCCCMCVYMH
DKRBGKGGGCGKBD
B1H
Zhu et al.(2011)
sr_SANGER_5_FBgn0003499
0.764
0.739
sr
M06073_2.00
Drosophila melanogaster
NNMCRCCCMCVHNN
NNDBGKGGGYGKNN
B1H
Zhu et al.(2011)
sr_SOLEXA_5_FBgn0003499
0.764
0.739
Egr1
M01864_2.00
Mus musculus
CCCMCGYNN
NNRCGKGGG
PBM
Weirauch et al.(2014)
pTH5337
0.761
0.768
Egr1
M00375_2.00
Mus musculus
NCCYMCDNN
NNHGKRGGN
PBM
Berger et al.(2006)
Zif268
0.761
0.768
EGR1
M02883_2.00
Homo sapiens
NMCGCCCMCGCANN
NNTGCGKGGGCGKN
SELEX
Jolma et al.(2013)
EGR1_1
0.761
0.768
EGR1
M02884_2.00
Homo sapiens
HMCGCCCACGCAHW
WDTGCGTGGGCGKD
SELEX
Jolma et al.(2013)
EGR1_2
0.761
0.768
Egr1
M02932_2.00
Mus musculus
HHMCGCCCMCBCAHHH
DDDTGVGKGGGCGKDD
SELEX
Jolma et al.(2013)
Egr1_1
0.761
0.768
EGR1
M04437_2.00
Homo sapiens
NNCRCCCMCRCNN
NNGYGKGGGYGNN
SELEX
Yin et al.(2017)
EGR1_eDBD_HT-SELEX
0.761
0.768
Egr1
M05860_2.00
Mus musculus
NNMCRCCCMCGCN
NGCGKGGGYGKNN
SMiLE-seq
Isakova et al.(2017)
EGR1
0.761
0.768
EGR1
M07927_2.00
Homo sapiens
NVBNNNNBCCGCCCMCGCNB
VNGCGKGGGCGGVNNNNVBN
ChIP-seq
Gerstein et al.(2012)
GM12878_EGR1_HudsonAlpha
0.761
0.768
EGR1
M07928_2.00
Homo sapiens
BNCCGCCCMCGCNBB
VVNGCGKGGGCGGNV
ChIP-seq
Gerstein et al.(2012)
H1-hESC_EGR1_HudsonAlpha
0.761
0.768
EGR1
M07929_2.00
Homo sapiens
NNNNNNBNNCCRCCCMCGCN
NGCGKGGGYGGNNVNNNNNN
ChIP-seq
Gerstein et al.(2012)
K562_EGR1_HudsonAlpha
0.761
0.768
EGR1
M08882_2.00
Homo sapiens
BHNCCDCCCMCDCHBNB
VNVDGHGKGGGHGGNDV
Misc
Kulakovskiy et al.(2013)
EGR1_HUMAN.H11MO.0.A
0.761
0.768
Egr1
M08996_2.00
Mus musculus
YYCCRCCCMCGCNB
VNGCGKGGGYGGRR
Misc
Kulakovskiy et al.(2013)
EGR1_MOUSE.H11MO.0.A
0.761
0.768
EGR1
M09506_2.00
Homo sapiens
CRCCCMCRCA
TGYGKGGGYG
Misc
Heinz et al.(2010)
K562-Egr1_GSE32465
0.761
0.768
EGR1
M10188_2.00
Homo sapiens
MCGCCYACGCAW
WTGCGTRGGCGK
Transfac
Matys et al.(2006)
V$EGR1_01
0.761
0.768
EGR1
M10189_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EGR1_02
0.761
0.768
EGR1
M10190_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EGR1_09
0.761
0.768
EGR1
M10191_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EGR1_11
0.761
0.768
EGR1
M10192_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EGR1_12
0.761
0.768
EGR1
M10193_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EGR1_13
0.761
0.768
EGR1
M10194_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EGR1_15
0.761
0.768
EGR1
M10195_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EGR1_Q3
0.761
0.768
EGR1
M10196_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EGR1_Q6
0.761
0.768
EGR1
M04438_2.00
Homo sapiens
NHCDCCCMCNYNN
NNRNGKGGGHGDN
SELEX
Yin et al.(2017)
EGR1_eDBD_Methyl-HT-SELEX
0.761
0.768
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CPRT0000002812
C2H2 ZF
481
503
HKCTSCNKCFSRSDELTRHARIH
CPRT0000002812
C2H2 ZF
509
531
FKCVECQREFSRSDHLTTHMRTH
CPRT0000002812
C2H2 ZF
537
559
FVCDICGRSFARSDERKRHTKVH
Links
Other
C2H2 ZF
family TFs
Other
Schistosoma japonicum
TFs
182 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy