CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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rest
(
Xenopus tropicalis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
XB-GENE-955466
T145647_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Rest
M08983_2.00
Mus musculus
DGBHGCTGTCCDHGGTSCTGRH
DYCAGSACCDHGGACAGCDVCH
Misc
Kulakovskiy et al.(2013)
REST_MOUSE.H11MO.0.A
0.767
0.894
Rest
M10362_2.00
Rattus norvegicus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NRSF_Q4
0.767
0.894
REST
M08084_2.00
Homo sapiens
GSHGCTGTCCRWGGTSCTGAH
DTCAGSACCWYGGACAGCDSC
ChIP-seq
Mathelier et al.(2014)
MA0138.2
0.765
0.894
REST
M07846_2.00
Homo sapiens
TCCVHGGTGCTGAM
KTCAGCACCDBGGA
ChIP-seq
Gerstein et al.(2012)
GM12878_NRSF_HudsonAlpha
0.765
0.894
REST
M07847_2.00
Homo sapiens
GCTGTCCRHGGTGCT
AGCACCDYGGACAGC
ChIP-seq
Gerstein et al.(2012)
H1-hESC_NRSF_HudsonAlpha
0.765
0.894
REST
M07848_2.00
Homo sapiens
HGCTGTCCRWGGTSCT
AGSACCWYGGACAGCD
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_NRSF_HudsonAlpha
0.765
0.894
REST
M07849_2.00
Homo sapiens
TGTCCRHGGTGCTGA
TCAGCACCDYGGACA
ChIP-seq
Gerstein et al.(2012)
HepG2_NRSF_HudsonAlpha
0.765
0.894
REST
M07850_2.00
Homo sapiens
TGTCCVHGGTGCTGA
TCAGCACCDBGGACA
ChIP-seq
Gerstein et al.(2012)
HTB-11_NRSF_HudsonAlpha
0.765
0.894
REST
M07851_2.00
Homo sapiens
CTGTCCVHGGTGCTGA
TCAGCACCDBGGACAG
ChIP-seq
Gerstein et al.(2012)
K562_NRSF_HudsonAlpha
0.765
0.894
REST
M07852_2.00
Homo sapiens
GSHGCTGTCCRHGGTGCTGAM
KTCAGCACCDYGGACAGCDSC
ChIP-seq
Gerstein et al.(2012)
PANC-1_NRSF_HudsonAlpha
0.765
0.894
REST
M07853_2.00
Homo sapiens
CTGTCCRHGGTGCTG
CAGCACCDYGGACAG
ChIP-seq
Gerstein et al.(2012)
PFSK-1_NRSF_HudsonAlpha
0.765
0.894
REST
M07854_2.00
Homo sapiens
GSHGCTGTCCRHGGT
ACCDYGGACAGCDSC
ChIP-seq
Gerstein et al.(2012)
U87_NRSF_HudsonAlpha
0.765
0.894
REST
M08861_2.00
Homo sapiens
DGSHGCTGTCCRHGGTGCTGAH
DTCAGCACCDYGGACAGCDSCH
Misc
Kulakovskiy et al.(2013)
REST_HUMAN.H11MO.0.A
0.765
0.894
REST
M09501_2.00
Homo sapiens
GGHGCTGTCCRWGGTGCTGA
TCAGCACCWYGGACAGCDCC
Misc
Heinz et al.(2010)
Jurkat-NRSF
0.765
0.894
REST
M10116_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NRSE_B
0.765
0.894
REST
M10117_2.00
Homo sapiens
GSYKCTGTCCGYGGTGCTGAA
TTCAGCACCRCGGACAGMRSC
Transfac
Matys et al.(2006)
V$NRSF_01
0.765
0.894
REST
M10118_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$REST_01
0.765
0.894
REST
M10119_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$REST_04
0.765
0.894
REST
M10120_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$REST_05
0.765
0.894
REST
M10121_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$REST_06
0.765
0.894
REST
M10122_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$REST_10
0.765
0.894
REST
M10123_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$REST_12
0.765
0.894
REST
M10124_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$REST_Q5
0.765
0.894
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CAJ81614
C2H2 ZF
211
233
IQCDRCGYNTNRFDHYLAHLKHH
CAJ81614
C2H2 ZF
243
265
YKCTICTYTTVSEYHWKKHLRNH
CAJ81614
C2H2 ZF
271
293
YTCSQCSYFSDRKNNYIQHIRTH
CAJ81614
C2H2 ZF
299
321
YQCIICPYSSSQKTHLTRHMRTH
CAJ81614
C2H2 ZF
327
350
FKCEQCSYVASNQHEVTRHARQVH
CAJ81614
C2H2 ZF
356
378
LTCPHCDYKTADRSNFKKHVELH
CAJ81614
C2H2 ZF
384
407
FLCPVCDYAASKKCNLQYHIKSRH
XP_002937593
C2H2 ZF
211
233
IQCDRCGYNTNRFDHYLAHLKHH
XP_002937593
C2H2 ZF
243
265
YKCTICTYTTVSEYHWKKHLRNH
XP_002937593
C2H2 ZF
271
293
YTCSQCSYFSDRKNNYIQHIRTH
XP_002937593
C2H2 ZF
299
321
YQCIICPYSSSQKTHLTRHMRTH
XP_002937593
C2H2 ZF
327
350
FKCEQCSYVASNQHEVTRHARQVH
XP_002937593
C2H2 ZF
356
378
LTCPHCDYKTADRSNFKKHVELH
XP_002937593
C2H2 ZF
384
407
FLCPVCDYAASKKCNLQYHIKSRH
Links
Other
C2H2 ZF
family TFs
Other
Xenopus tropicalis
TFs
58 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
rest.S
Xenopus laevis
XB-GENE-955471
I
0.825
rest.L
Xenopus laevis
XB-GENE-6256442
I
0.825
ENSPSIG00000002988
Pelodiscus sinensis
ENSPSIG00000002988
I
0.807
Alligator_sinensis_CCG021969.1
Alligator sinensis
Alligator_sinensis_CCG021969.1
I
0.807
Afo_R012862
Aptenodytes forsteri
Afo_R012862
I
0.807
ENSMGAG00000008536
Meleagris gallopavo
ENSMGAG00000008536
I
0.807
Brh_R004325
Buceros rhinoceros
Brh_R004325
I
0.807
ENSGALG00000011390
Gallus gallus
ENSGALG00000011390
I
0.807
Tal_R011864
Tyto alba
Tal_R011864
I
0.807
ENSAPLG00000009372
Anas platyrhynchos
ENSAPLG00000009372
I
0.807
ENSMODG00000020702
Monodelphis domestica
ENSMODG00000020702
I
0.805
ENSMEUG00000010330
Macropus eugenii
ENSMEUG00000010330
I
0.804
ENSSHAG00000016270
Sarcophilus harrisii
ENSSHAG00000016270
I
0.804
ENSFALG00000006682
Ficedula albicollis
ENSFALG00000006682
I
0.799
Gfo_R000933
Geospiza fortis
Gfo_R000933
I
0.799
ENSTGUG00000004749
Taeniopygia guttata
ENSTGUG00000004749
I
0.799
Pvit_05779
Pogona vitticeps
Pvit_05779
I
0.796
REST
Anolis carolinensis
ENSACAG00000002355
I
0.795
Aan_R014984
Calypte anna
Aan_R014984
I
0.794
rest
Danio rerio
ENSDARG00000103046
I
0.791
REST
Erinaceus europaeus
ENSEEUG00000001134
I
0.769
Rest
Rattus norvegicus
ENSRNOG00000002074
D
0.767
Rest
Mus musculus
ENSMUSG00000029249
D
0.767
REST
Pteropus vampyrus
ENSPVAG00000010391
I
0.765
REST
Pan troglodytes
ENSPTRG00000016087
I
0.765
ENSP00000311816-D1
Bos grunniens
ENSP00000311816-D1
I
0.765
ENSSTOG00000007375
Ictidomys tridecemlineatus
ENSSTOG00000007375
I
0.765
REST
Tupaia belangeri
ENSTBEG00000014480
I
0.765
ENSBTAP00000039405-D1
Bos grunniens
ENSBTAP00000039405-D1
I
0.765
ENSP00000311816
Macaca fascicularis
ENSP00000311816
I
0.765
ENSSARG00000010385
Sorex araneus
ENSSARG00000010385
I
0.765
REST
Oryctolagus cuniculus
ENSOCUG00000001776
I
0.765
REST
Homo sapiens
ENSG00000084093
D
0.765
REST
Gorilla gorilla
ENSGGOG00000002165
I
0.765
ENSPPYG00000014745
Pongo abelii
ENSPPYG00000014745
I
0.765
ENSMICG00000017078
Microcebus murinus
ENSMICG00000017078
I
0.765
REST
Felis catus
ENSFCAG00000003904
I
0.765
ENSBTAG00000019359
Bos taurus
ENSBTAG00000019359
I
0.765
REST
Canis familiaris
ENSCAFG00000002254
I
0.765
ENSCSAG00000005119
Chlorocebus sabaeus
ENSCSAG00000005119
I
0.765
REST
Dasypus novemcinctus
ENSDNOG00000049113
I
0.765
REST
Myotis lucifugus
ENSMLUG00000014530
I
0.765
REST
Macaca mulatta
ENSMMUG00000018821
I
0.765
ENSOGAG00000015986
Otolemur garnettii
ENSOGAG00000015986
I
0.765
REST
Ochotona princeps
ENSOPRG00000008088
I
0.765
ENSPANG00000017819
Papio anubis
ENSPANG00000017819
I
0.765
ENSOARG00000005019
Ovis aries
ENSOARG00000005019
I
0.765
ENSOARG00000004929
Ovis aries
ENSOARG00000004929
I
0.765
ENSNLEG00000008836
Nomascus leucogenys
ENSNLEG00000008836
I
0.765
ENSBTAG00000011789
Bos taurus
ENSBTAG00000011789
I
0.765
ENSAMEG00000008541
Ailuropoda melanoleuca
ENSAMEG00000008541
I
0.765
REST
Callithrix jacchus
ENSCJAG00000004081
I
0.765
REST
Loxodonta africana
ENSLAFG00000003195
I
0.763
REST
Equus caballus
ENSECAG00000022536
I
0.762
Myotis_brandtii_REST_10026791
Myotis brandtii
Myotis_brandtii_REST_10026791
I
0.759
ENSSSCG00000008893
Sus scrofa
ENSSSCG00000008893
I
0.758
REST
Sus scrofa
ENSSSCG00000023357
I
0.758