mtf1 (Xenopus tropicalis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 XB-GENE-979128 T145687_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Mtf1
M00136_2.00
Mus musculus
CGTGYGCAM

KTGCRCACG
PBM
Badis et al.(2009)
Mtf1_2377
0.790 0.935
MTF1
M02922_2.00
Homo sapiens
GTGCCGTGTGCAAA

TTTGCACACGGCAC
SELEX
Jolma et al.(2013)
MTF1_1
0.790 0.935
MTF1
M04617_2.00
Homo sapiens
NDNDYCGTGTGCAAARN

NYTTTGCACACGRHNHN
SELEX
Yin et al.(2017)
MTF1_eDBD_HT-SELEX
0.790 0.935
MTF1
M08942_2.00
Homo sapiens
MGKVHCGTGYGCADMDB

VHKHTGCRCACGDBMCK
Misc
Kulakovskiy et al.(2013)
MTF1_HUMAN.H11MO.0.C
0.790 0.935
Mtf1
M08981_2.00
Mus musculus
MGKVHCGTGYGCADMDB

VHKHTGCRCACGDBMCK
Misc
Kulakovskiy et al.(2013)
MTF1_MOUSE.H11MO.0.C
0.790 0.935
MTF1
M10308_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MTF1_01
0.790 0.935
MTF1
M10309_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MTF1_02
0.790 0.935
MTF1
M10310_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MTF1_Q4
0.790 0.935
MTF1
M10311_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MTF1_Q5
0.790 0.935
MTF1
M04618_2.00
Homo sapiens
NRNRCCGTGTGCAAARV

BYTTTGCACACGGYNYN
SELEX
Yin et al.(2017)
MTF1_eDBD_Methyl-HT-SELEX
0.790 0.935
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
XP_002939525 C2H2 ZF 146 170
XP_002939525 C2H2 ZF 176 200
XP_002939525 C2H2 ZF 206 230
XP_002939525 C2H2 ZF 235 259
XP_002939525 C2H2 ZF 265 289
XP_002939525 C2H2 ZF 295 319

Links

Other C2H2 ZF family TFs
Other Xenopus tropicalis TFs

62 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AT1G63040 Arabidopsis thaliana AT1G63040 D 0.000
BGIOSGA008802 Oryza indica BGIOSGA008802 I 0.000
BGIOSGA016949 Oryza indica BGIOSGA016949 N 0.000
Bo9g028820 Brassica oleracea Bo9g028820 I 0.000
BRADI3G51610 Brachypodium distachyon BRADI3G51610 N 0.000
Cagra.0568s0175 Capsella grandiflora Cagra.0568s0175 I 0.000
Cagra.6357s0007 Capsella grandiflora Cagra.6357s0007 I 0.000
Carubv10012147m.g Capsella rubella Carubv10012147m.g I 0.000
Carubv10022214m.g Capsella rubella Carubv10022214m.g I 0.000
Cla011673 Citrullus lanatus Cla011673 I 0.000
Cucsa.302760 Cucumis sativus Cucsa.302760 I 0.000
fgenesh1_pm.C_scaffold_1001063 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001063 I 0.000
Gorai.003G162600 Gossypium raimondii Gorai.003G162600 I 0.000
GRMZM2G000520 Zea mays GRMZM2G000520 I 0.000
GRMZM2G434203 Zea mays GRMZM2G434203 I 0.000
LPERR02G22600 Leersia perrieri LPERR02G22600 I 0.000
LPERR04G18180 Leersia perrieri LPERR04G18180 N 0.000
MLOC_62554 Hordeum vulgare MLOC_62554 N 0.000
OBART02G27750 Oryza barthii OBART02G27750 I 0.000
OBART04G22210 Oryza barthii OBART04G22210 N 0.000
OGLUM02G28310 Oryza glumaepatula OGLUM02G28310 I 0.000
OGLUM04G22250 Oryza glumaepatula OGLUM04G22250 N 0.000
OMERI02G26970 Oryza meridionalis OMERI02G26970 I 0.000
OMERI04G18760 Oryza meridionalis OMERI04G18760 N 0.000
ONIVA02G30630 Oryza nivara ONIVA02G30630 I 0.000
ONIVA04G20830 Oryza nivara ONIVA04G20830 N 0.000
OPUNC02G25450 Oryza punctata OPUNC02G25450 I 0.000
ORUFI02G29210 Oryza rufipogon ORUFI02G29210 I 0.000
ORUFI04G23880 Oryza rufipogon ORUFI04G23880 N 0.000
OS02G0676800 Oryza sativa OS02G0676800 I 0.000
OS04G0572200 Oryza sativa OS04G0572200 N 0.000
Pavir.Ab02683 Panicum virgatum Pavir.Ab02683 I 0.000
PGSC0003DMG400022759 Solanum tuberosum PGSC0003DMG400022759 I 0.000
Sb04g031960 Sorghum bicolor Sb04g031960 I 0.000
scaffold_101390.1 Arabidopsis lyrata scaffold_101390.1 I 0.000
Solyc08g080290.2 Solanum lycopersicum Solyc08g080290.2 I 0.000
TCM_016176 Theobroma cacao TCM_016176 I 0.000
Thhalv10009659m.g Eutrema salsugineum Thhalv10009659m.g I 0.000
Traes_6DL_FD6D63D1A Triticum aestivum Traes_6DL_FD6D63D1A N 0.000