CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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D917_04158
(
Trichinella nativa
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
D917_04158
T152863_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Sp4
M01862_2.00
Mus musculus
NMCGCCCMY
RKGGGCGKN
PBM
Weirauch et al.(2014)
pTH4998
0.763
0.783
Sp4
M00133_2.00
Mus musculus
HMCGCCCMYN
NRKGGGCGKD
PBM
Badis et al.(2009)
Sp4_1011
0.763
0.783
Sp4
M05859_2.00
Mus musculus
DGNYMCGCCCHNN
NNDGGGCGKRNCH
SMiLE-seq
Isakova et al.(2017)
SP4
0.763
0.783
Sp4
M08975_2.00
Mus musculus
BYHDKCYCCGCCYYYHBSBB
VVSVDRRRGGCGGRGMHDRV
Misc
Kulakovskiy et al.(2013)
SP4_MOUSE.H11MO.0.B
0.763
0.783
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
D917_04158
C2H2 ZF
1050
1074
HVCHIANCGRTYGKTSHLRAHLRWH
D917_04158
C2H2 ZF
1080
1104
FSCDWPLCEKRFTRSDELQRHHRTH
D917_04158
C2H2 ZF
1110
1132
FLCCICQKRFLRSDHLTKHKKTH
Links
Other
C2H2 ZF
family TFs
Other
Trichinella nativa
TFs
26 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy