genemark-nMf.1.1.scaf00221-processed-gene-0.5 (Meloidogyne floridensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 genemark-nMf.1.1.scaf00221-processed-gene-0.5 T153529_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
pat-9
M00620_2.00 		Caenorhabditis elegans
NDKTKTAAHN
NDTTAMAMHN		 PBM
Narasimhan et al.(2015)
pTH10808 		0.791 0.870
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
genemark-nMf.1.1.scaf00221-processed-gene-0.5-mRNA-1 C2H2 ZF 118 140
genemark-nMf.1.1.scaf00221-processed-gene-0.5-mRNA-1 C2H2 ZF 146 168

Links

Other C2H2 ZF family TFs
Other Meloidogyne floridensis TFs

Invalid Input OrderBy

30 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action