CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Hba_09212
(
Heterorhabditis bacteriophora
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Hba_09212
T153747_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
blmp-1
M08103_2.00
Caenorhabditis elegans
YTYTCHYTTTY
RAAARDGARAR
ChIP-seq
Mathelier et al.(2014)
MA0537.1
0.799
0.912
blmp-1
M08195_2.00
Caenorhabditis elegans
VACTTTCDCY
RGHGAAAGTB
ChIP-seq
Contrino et al.(2012)
Mw137
0.799
0.912
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Hba_09212
C2H2 ZF
936
958
YACKECHKTFGQLSNLKVHVRTH
Hba_09212
C2H2 ZF
964
986
FKCTVCGKEFTQLAHLQKHNLVH
Hba_09212
C2H2 ZF
992
1014
HRCDICDKRFSSTSNLKTHLRLH
Hba_09212
C2H2 ZF
1020
1042
YACDVCSAKFTQYVHLRLHKRLH
Hba_09212
C2H2 ZF
1048
1069
YACSTCGKKYISPSGLRTHWKT
Links
Other
C2H2 ZF
family TFs
Other
Heterorhabditis bacteriophora
TFs
23 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy