CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MhA1_Contig334.frz3.gene6
(
Meloidogyne hapla
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
MhA1_Contig334.frz3.gene6
T154978_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
lsy-2
M00615_2.00
Caenorhabditis elegans
NTACMGTANN
NNTACKGTAN
PBM
Narasimhan et al.(2015)
pTH10810
0.761
0.870
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MhA1_Contig334.frz3.gene6
C2H2 ZF
70
92
HQCPVCNKIFVSFKGLQQHAIIH
MhA1_Contig334.frz3.gene6
C2H2 ZF
98
120
YSCDICGKAFRFKSNLFEHRSVH
MhA1_Contig334.frz3.gene6
C2H2 ZF
126
148
HQCPICGKTCRLKGNLKKHLRTH
Links
Other
C2H2 ZF
family TFs
Other
Meloidogyne hapla
TFs
42 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy